RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SGTBQ96EQ0 304 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 SUCNR1Q9BXA5 334 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 CCNB1IP1Q9NPC3 277 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 C20orf141Q9NUB4 165 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 TANC2Q9HCD6 1990 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 IGKV1D-43A0A0B4J1Z2 117 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 NPIPB13A6NJU9 1138 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 NPIPB4C9JG80 1138 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 ADRA2CP18825 462 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 MAKP20794 623 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 GATA3P23771 443 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 MPV17P39210 176 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 THEM4Q5T1C6 240 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 MBNL2Q5VZF2 373 aaKnown RBP17.88■□□□□ 0.45
VPS53-216ENST00000574029 MOSPD2Q8NHP6 518 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 SGMS2Q8NHU3 365 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 NANPQ8TBE9 248 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 TMEM255BQ8WV15 326 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 IPCEF1Q8WWN9 437 aaPredicted RBP17.88■□□□□ 0.45
VPS53-216ENST00000574029 HDAC2Q92769 488 aaKnown RBP17.88■□□□□ 0.45
VPS53-216ENST00000574029 SLC6A7Q99884 636 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 EIF3KQ9UBQ5 218 aaKnown RBP17.88■□□□□ 0.45
VPS53-216ENST00000574029 SH3GLB1Q9Y371 365 aa17.88■□□□□ 0.45
VPS53-216ENST00000574029 LOC100509620A0A075B734 347 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 WIPF1O43516 503 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 SPRY3O43610 288 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 UBOX5O94941 541 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 ADH4P08319 380 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 GCH1P30793 250 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 PSG4Q00888 419 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 FMODQ06828 376 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 SPATA46Q5T0L3 261 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 SLC25A47Q6Q0C1 308 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 UNQ6126/PRO20091Q6UXV3 157 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 C1orf174Q8IYL3 243 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 SLC25A40Q8TBP6 338 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 KLF14Q8TD94 323 aaPredicted RBP17.87■□□□□ 0.45
VPS53-216ENST00000574029 TMEM239Q8WW34 195 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 CCL17Q92583 94 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 POLR2J2Q9GZM3 115 aaKnown RBP17.87■□□□□ 0.45
VPS53-216ENST00000574029 POLR2J3Q9H1A7 115 aaKnown RBP17.87■□□□□ 0.45
VPS53-216ENST00000574029 OPN4Q9UHM6 478 aa17.87■□□□□ 0.45
VPS53-216ENST00000574029 PLSCR5A0PG75 271 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 C5orf49A4QMS7 147 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 ZSCAN5BA6NJL1 495 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 ICMTO60725 284 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 OR5F1O95221 314 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 FSHBP01225 129 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 GDI2P50395 445 aaKnown RBP17.86■□□□□ 0.45
VPS53-216ENST00000574029 TAS2R41P59536 307 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 FAM27BQ5VT28 67 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 ZDHHC22Q8N966 263 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 AKR7LQ8NHP1 331 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 GAL3ST1Q99999 423 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 OR2J1Q9GZK6 312 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 C7orf69Q9H7B7 122 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 ESM1Q9NQ30 184 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 CYSLTR2Q9NS75 346 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 RIMS3Q9UJD0 308 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 KLHL21Q9UJP4 597 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 BAG5Q9UL15 447 aa17.86■□□□□ 0.45
VPS53-216ENST00000574029 NR2C1P13056 603 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 TNFRSF1BP20333 461 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 LIPAP38571 399 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 ERVK-25P63136 954 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 SLC3A1Q07837 685 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 PIN1Q13526 163 aaPredicted RBP17.85■□□□□ 0.45
VPS53-216ENST00000574029 LAPTM4AQ15012 233 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 SGCAQ16586 387 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 NANOGP8Q6NSW7 305 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 BPIFB2Q8N4F0 458 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 NSMAFQ92636 917 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 TXNIPQ9H3M7 391 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 SAR1AQ9NR31 198 aa17.85■□□□□ 0.45
VPS53-216ENST00000574029 CGGBP1Q9UFW8 167 aaPredicted RBP17.85■□□□□ 0.45
VPS53-216ENST00000574029 GMNCA6NCL1 334 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 H3BSA7 217 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 FBP2O00757 339 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 PRSS23O95084 383 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 CD55P08174 381 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 THRBP10828 461 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 PPP1CBP62140 327 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 CD47Q08722 323 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 TAF11Q15544 211 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 RFPL4BQ6ZWI9 263 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 CALHM3Q86XJ0 350 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 C10orf82Q8WW14 230 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 ALG12Q9BV10 488 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 OR2H1Q9GZK4 316 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 EGLN1Q9GZT9 426 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 WNT5BQ9H1J7 359 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 ZDHHC8Q9ULC8 765 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 HIF3AQ9Y2N7 669 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 MED31Q9Y3C7 131 aa17.84■□□□□ 0.45
VPS53-216ENST00000574029 PPIAL4EA0A075B759 164 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 PPIAL4CA0A0B4J2A2 164 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 PPIAL4DF5H284 164 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 SHOX2O60902 331 aaPredicted RBP17.83■□□□□ 0.44
VPS53-216ENST00000574029 CST2P09228 141 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 PPIAL4FP0DN26 164 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms