RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PATL1Q86TB9 770 aaKnown RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 MSRB3Q8IXL7 192 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 TMEM123Q8N131 208 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 TMEM86BQ8N661 226 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 LSMEM1Q8N8F7 131 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 OR1J1Q8NGS3 322 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 LINC01006Q8NI28 216 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 RP9Q8TA86 221 aaKnown RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 TBC1D15Q8TC07 691 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 PNPT1Q8TCS8 783 aaKnown RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 FAM71F1Q96KD3 344 aaPredicted RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 LRR1Q96L50 414 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 ZNF75AQ96N20 296 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 CPPED1Q9BRF8 314 aaPredicted RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 SLC19A3Q9BZV2 496 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 KAT8Q9H7Z6 458 aaKnown RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 CYSLTR2Q9NS75 346 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 RPS6KB2Q9UBS0 482 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 ANGPT4Q9Y264 503 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 M0R082 166 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 FZD7O75084 574 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 SERPINI2O75830 405 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 CLPXO76031 633 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 PLATP00750 562 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 IGHV3-13P01766 116 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 BCHEP06276 602 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 CBLP22681 906 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 LIPAP38571 399 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 PCBP3P57721 371 aaKnown RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 SEC61A1P61619 476 aaKnown RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 PLAURQ03405 335 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 KLF10Q13118 480 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 NFYCQ13952 458 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 ZNF718Q3SXZ3 478 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 ZMAT1Q5H9K5 638 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 FAM91A1Q658Y4 838 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 RUSC1-AS1Q66K80 236 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 C6orf89Q6UWU4 347 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 Q6YL49 198 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 VASH1Q7L8A9 365 aaPredicted RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 ZNF627Q7L945 461 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 SKA3Q8IX90 412 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 C1orf174Q8IYL3 243 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 OR6S1Q8NH40 331 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 ZNF417Q8TAU3 575 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 DNAJA4Q8WW22 397 aaPredicted RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 SSMEM1Q8WWF3 244 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 GEMIN6Q8WXD5 167 aaKnown RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 DYRK2Q92630 601 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 UPRTQ96BW1 309 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 THOC1Q96FV9 657 aaKnown RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 ZNF587Q96SQ5 575 aaPredicted RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 POLR2J2Q9GZM3 115 aaKnown RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 POLR2J3Q9H1A7 115 aaKnown RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 B3GAT1Q9P2W7 334 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 EIF3KQ9UBQ5 218 aaKnown RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 ZNF443Q9Y2A4 671 aaPredicted RBP9.32□□□□□ -0.92
VPS53-207ENST00000570510 POMT1Q9Y6A1 747 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 CAPN7Q9Y6W3 813 aa9.32□□□□□ -0.92
VPS53-207ENST00000570510 FTCDNL1E5RQL4 147 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 IFNA14P01570 189 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 IGHV2-70P01814 119 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 TNFSF4P23510 183 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 PRDX6P30041 224 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 GRPRP30550 384 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 APLNRP35414 380 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 ACAA2P42765 397 aaKnown RBP9.31□□□□□ -0.92
VPS53-207ENST00000570510 CSNK1A1P48729 337 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 BPIFB3P59826 476 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 GNB2P62879 340 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 TNFAIP6P98066 277 aaPredicted RBP9.31□□□□□ -0.92
VPS53-207ENST00000570510 SCARB2Q14108 478 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 SLC36A2Q495M3 483 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 GTDC1Q4AE62 458 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 TMEM155Q4W5P6 130 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 FAM69AQ5T7M9 428 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 HACD2Q6Y1H2 254 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 CCDC80Q76M96 950 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 ZNF584Q8IVC4 421 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 SLC22A24Q8N4F4 322 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 PAQR4Q8N4S7 273 aaPredicted RBP9.31□□□□□ -0.92
VPS53-207ENST00000570510 C10orf82Q8WW14 230 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 SLC38A4Q969I6 547 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 CMTM5Q96DZ9 223 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 PLEKHA8Q96JA3 519 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 HOPXQ9BPY8 73 aaPredicted RBP9.31□□□□□ -0.92
VPS53-207ENST00000570510 SSBP3Q9BWW4 388 aaPredicted RBP9.31□□□□□ -0.92
VPS53-207ENST00000570510 ZNF224Q9NZL3 707 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 SLAMF8Q9P0V8 285 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 ZDHHC8Q9ULC8 765 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 LRCH1Q9Y2L9 728 aa9.31□□□□□ -0.92
VPS53-207ENST00000570510 HTR3EA5X5Y0 456 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 GMNCA6NCL1 334 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 A8MXK9 166 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 NPIPB7O75200 414 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 SNAP29O95721 258 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 OPN1MWP04001 364 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 OPN1MW2P0DN77 364 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 OPN1MW3P0DN78 364 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms