RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ETFDHQ16134 617 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 Q5PR19 223 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 FAM27BQ5VT28 67 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 LEG1Q6P5S2 330 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 MYPOPQ86VE0 399 aaPredicted RBP11.27□□□□□ -0.61
CLK3-224ENST00000568605 ALDH16A1Q8IZ83 802 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 PAPD5Q8NDF8 572 aaKnown RBP11.27□□□□□ -0.61
CLK3-224ENST00000568605 SLC30A7Q8NEW0 376 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 IGFBPL1Q8WX77 278 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 RERGLQ9H628 205 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 EGLN3Q9H6Z9 239 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 ZNF442Q9H7R0 627 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 CDH20Q9HBT6 801 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 IL20Q9NYY1 176 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 KIF17Q9P2E2 1029 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 IGKV1D-43A0A0B4J1Z2 117 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 SLC16A7O60669 478 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 SNAP29O95721 258 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 GASTP01350 101 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 IFNGP01579 166 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 CTLA4P16410 223 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 ZNF32P17041 273 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 LAP3P28838 519 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 CALCRP30988 508 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 ERFP50548 548 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 GLO1Q04760 184 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 CLEC12AQ5QGZ9 265 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 KRT80Q6KB66 452 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 UNQ6126/PRO20091Q6UXV3 157 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 SYT9Q86SS6 491 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 GLB1L2Q8IW92 636 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 OR2T33Q8NG76 320 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 DNAJC9Q8WXX5 260 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 HTRA1Q92743 480 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 MS4A3Q96HJ5 214 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 RACGAP1Q9H0H5 632 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 BARX1Q9HBU1 254 aaPredicted RBP11.26□□□□□ -0.61
CLK3-224ENST00000568605 POLE4Q9NR33 117 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 ZNF701Q9NV72 531 aaPredicted RBP11.26□□□□□ -0.61
CLK3-224ENST00000568605 PDP1Q9P0J1 537 aaPredicted RBP11.26□□□□□ -0.61
CLK3-224ENST00000568605 POLR1DQ9Y2S0 133 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 PMF1-BGLAPU3KQ54 211 aa11.26□□□□□ -0.61
CLK3-224ENST00000568605 B9A039 149 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 H3BN98 237 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 OVOL3O00110 214 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 SOX14O95416 240 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 MMP7P09237 267 aaPredicted RBP11.25□□□□□ -0.61
CLK3-224ENST00000568605 PATE4P0C8F1 98 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 ANXA8P13928 327 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 HIST1H1CP16403 213 aaKnown RBP11.25□□□□□ -0.61
CLK3-224ENST00000568605 CDKN1AP38936 164 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLK3-224ENST00000568605 AQP6Q13520 282 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 PABPC1L2AQ5JQF8 200 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 VHLLQ6RSH7 139 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 PRSS57Q6UWY2 283 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 PTCHD4Q6ZW05 846 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 ASRGL1Q7L266 308 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 SDR9C7Q8NEX9 313 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 OR10H5Q8NGA6 315 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 OR4K13Q8NH42 304 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 FBXO17Q96EF6 278 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 NRBF2Q96F24 287 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 ZNF75AQ96N20 296 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 NMNAT3Q96T66 252 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 FEVQ99581 238 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 BDH2Q9BUT1 245 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 TSSK6Q9BXA6 273 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 CACNG6Q9BXT2 260 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 TEX12Q9BXU0 123 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 KLHL21Q9UJP4 597 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 NDRG4Q9ULP0 352 aaKnown RBP11.25□□□□□ -0.61
CLK3-224ENST00000568605 TIMM10BQ9Y5J6 103 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 RTTNQ86VV8 2226 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 TANC2Q9HCD6 1990 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 CR1P17927 2039 aa11.25□□□□□ -0.61
CLK3-224ENST00000568605 CELSR1Q9NYQ6 3014 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 RIIAD1A6NNX1 92 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 H7C417 338 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 BHLHE40O14503 412 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 TIPRLO75663 272 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 ERCC1P07992 297 aaPredicted RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 ZNF35P13682 527 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 ZNF3P17036 446 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 NR4A1P22736 598 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 FASP25445 335 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 STOMP27105 288 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 GLRXP35754 106 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 SERPINF1P36955 418 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 CDKN2AP42771 156 aaKnown RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 CENPAP49450 140 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 GDI2P50395 445 aaKnown RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 LSM6P62312 80 aaKnown RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 EFNB3Q15768 340 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 C11orf71Q6IPW1 123 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 SHQ1Q6PI26 577 aaKnown RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 CD300LDQ6UXZ3 194 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 YTHDF3Q7Z739 585 aaKnown RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 TGIF2LYQ8IUE0 185 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 ZNF584Q8IVC4 421 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms