RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 LIPHQ8WWY8 451 aa12.69□□□□□ -0.38
CLN3-228ENST00000567804 HDAC2Q92769 488 aaKnown RBP12.69□□□□□ -0.38
CLN3-228ENST00000567804 ELMOD3Q96FG2 381 aa12.69□□□□□ -0.38
CLN3-228ENST00000567804 POM121L2Q96KW2 1035 aa12.69□□□□□ -0.38
CLN3-228ENST00000567804 POLR2J2Q9GZM3 115 aaKnown RBP12.69□□□□□ -0.38
CLN3-228ENST00000567804 POLR2J3Q9H1A7 115 aaKnown RBP12.69□□□□□ -0.38
CLN3-228ENST00000567804 CCNB1IP1Q9NPC3 277 aa12.69□□□□□ -0.38
CLN3-228ENST00000567804 ARMCX1Q9P291 453 aa12.69□□□□□ -0.38
CLN3-228ENST00000567804 RIMS3Q9UJD0 308 aa12.69□□□□□ -0.38
CLN3-228ENST00000567804 BAG5Q9UL15 447 aa12.69□□□□□ -0.38
CLN3-228ENST00000567804 LOC100509620A0A075B734 347 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 FXYD1O00168 92 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 DYNC1I1O14576 645 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 SHOX2O60902 331 aaPredicted RBP12.68□□□□□ -0.38
CLN3-228ENST00000567804 IGHV1-46P01743 117 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 MAKP20794 623 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 GCH1P30793 250 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 MPV17P39210 176 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 ZNF81P51508 661 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 CD47Q08722 323 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 PIN1Q13526 163 aaPredicted RBP12.68□□□□□ -0.38
CLN3-228ENST00000567804 ZNF718Q3SXZ3 478 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 NANOGP8Q6NSW7 305 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 PEG10Q86TG7 708 aaKnown RBP12.68□□□□□ -0.38
CLN3-228ENST00000567804 FAM216AQ8WUB2 273 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 RAB1CQ92928 201 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 MARS2Q96GW9 593 aaKnown RBP12.68□□□□□ -0.38
CLN3-228ENST00000567804 TIMD4Q96H15 378 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 FAM107BQ9H098 131 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 TXNIPQ9H3M7 391 aa12.68□□□□□ -0.38
CLN3-228ENST00000567804 LOC100653049A0A140TA62 436 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 TMEM89A2RUT3 159 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 C5orf49A4QMS7 147 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 TRIM77I1YAP6 450 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 J3QLI3 93 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 SPRY3O43610 288 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 KRT34O76011 436 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 NR2C1P13056 603 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 ADRA2CP18825 462 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 GDI2P50395 445 aaKnown RBP12.67□□□□□ -0.38
CLN3-228ENST00000567804 ERVK-25P63136 954 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 PSG4Q00888 419 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 CYLC2Q14093 348 aaPredicted RBP12.67□□□□□ -0.38
CLN3-228ENST00000567804 LAPTM4AQ15012 233 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 SGCAQ16586 387 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 RABL3Q5HYI8 236 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 SPATA46Q5T0L3 261 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 THEM4Q5T1C6 240 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 DCAF12L2Q5VW00 463 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 SLC25A47Q6Q0C1 308 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 RFPL4BQ6ZWI9 263 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 POU5F2Q8N7G0 328 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 AKR7LQ8NHP1 331 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 SLC25A40Q8TBP6 338 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 JMJD8Q96S16 334 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 ELAC2Q9BQ52 826 aaKnown RBP12.67□□□□□ -0.38
CLN3-228ENST00000567804 RBM4Q9BWF3 364 aaKnown RBP12.67□□□□□ -0.38
CLN3-228ENST00000567804 OR2J1Q9GZK6 312 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 HIF3AQ9Y2N7 669 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 MED31Q9Y3C7 131 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 CAPN7Q9Y6W3 813 aa12.67□□□□□ -0.38
CLN3-228ENST00000567804 PLSCR5A0PG75 271 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 GMNCA6NCL1 334 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 ZSCAN5BA6NJL1 495 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 MRASO14807 208 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 ICMTO60725 284 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 UBOX5O94941 541 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 THRBP10828 461 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 OR1E2P47887 323 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 TAF11Q15544 211 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 ALG10Q5BKT4 473 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 FAM27BQ5VT28 67 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 MBNL2Q5VZF2 373 aaKnown RBP12.66□□□□□ -0.38
CLN3-228ENST00000567804 UNQ6126/PRO20091Q6UXV3 157 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 OR8J3Q8NGG0 315 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 KLF14Q8TD94 323 aaPredicted RBP12.66□□□□□ -0.38
CLN3-228ENST00000567804 CCL17Q92583 94 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 NSMAFQ92636 917 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 GCDHQ92947 438 aaPredicted RBP12.66□□□□□ -0.38
CLN3-228ENST00000567804 LRRC58Q96CX6 371 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 SH3GL1Q99961 368 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 GAL3ST1Q99999 423 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 ECSITQ9BQ95 431 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 ALG12Q9BV10 488 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 SUCNR1Q9BXA5 334 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 CYSLTR2Q9NS75 346 aa12.66□□□□□ -0.38
CLN3-228ENST00000567804 EIF3KQ9UBQ5 218 aaKnown RBP12.66□□□□□ -0.38
CLN3-228ENST00000567804 H3BSA7 217 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 PIP5K1CO60331 668 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 IGHMP01871 453 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 ADH4P08319 380 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 GATA3P23771 443 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 LAP3P28838 519 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 LIMS1P48059 325 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 GNGT1P63211 74 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 TOP3AQ13472 1001 aaPredicted RBP12.65□□□□□ -0.38
CLN3-228ENST00000567804 ERICH5Q6P6B1 374 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 FOXL2NBQ6ZUU3 175 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 TREML1Q86YW5 311 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 C1orf174Q8IYL3 243 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms