RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 HPXP02790 462 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 RHCEP18577 417 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 COL8A2P25067 703 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 LAP3P28838 519 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 CHN2P52757 468 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 GYS2P54840 703 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 KLF3P57682 345 aaPredicted RBP17.78■□□□□ 0.44
CLN3-219ENST00000565778 ERVS71-1P61550 626 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 PSG4Q00888 419 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 KRT72Q14CN4 511 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 FGD3Q5JSP0 725 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 ALDH16A1Q8IZ83 802 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 OR1J1Q8NGS3 322 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 AKR7LQ8NHP1 331 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 SLC7A13Q8TCU3 470 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 FAM46AQ96IP4 442 aaKnown RBP17.78■□□□□ 0.44
CLN3-219ENST00000565778 NDEL1Q9GZM8 345 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 CHODLQ9H9P2 273 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 NDUFAF4Q9P032 175 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 A0A1W2PRQ8 180 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 XKRYO14609 159 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 CD14P08571 375 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 ZNF250P15622 560 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 GDI2P50395 445 aaKnown RBP17.77■□□□□ 0.44
CLN3-219ENST00000565778 PCBD1P61457 104 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 GNGT1P63211 74 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 RIN1Q13671 783 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 DGCR6Q14129 220 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 MOGQ16653 247 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 ELFN2Q5R3F8 820 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 TMEM154Q6P9G4 183 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 FAM156AQ8NDB6 213 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 RDH5Q92781 318 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 SNX18Q96RF0 628 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 HINT3Q9NQE9 182 aaKnown RBP17.77■□□□□ 0.44
CLN3-219ENST00000565778 SLCO1C1Q9NYB5 712 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 LPAR3Q9UBY5 353 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 ADAM18Q9Y3Q7 739 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 TIMM10BQ9Y5J6 103 aa17.77■□□□□ 0.44
CLN3-219ENST00000565778 YLPM1P49750 1951 aaKnown RBP17.77■□□□□ 0.43
CLN3-219ENST00000565778 ANK3Q12955 4377 aaKnown RBP17.76■□□□□ 0.43
CLN3-219ENST00000565778 C5orf49A4QMS7 147 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 H7C1C5 153 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 LILRA1O75019 489 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 CST2P09228 141 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 TACSTD2P09758 323 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 FAM157CP0CG43 387 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 LCN6P62502 163 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 SNX33Q8WV41 574 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 POM121L2Q96KW2 1035 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 C7orf34Q96L11 122 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 Q96M85 177 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 GORASP2Q9H8Y8 452 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 AURKCQ9UQB9 309 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 V9GYQ6 96 aa17.76■□□□□ 0.43
CLN3-219ENST00000565778 IGLV3-9A0A075B6K5 115 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 LOC100509620A0A075B734 347 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 PTP4A3O75365 173 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 DIRAS1O95057 198 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 ZNF26P17031 533 aaPredicted RBP17.75■□□□□ 0.43
CLN3-219ENST00000565778 ITGA2P17301 1181 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 TRIP10Q15642 601 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 UNQ6126/PRO20091Q6UXV3 157 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 FAM86B1Q8N7N1 296 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 OR52J3Q8NH60 311 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 PYURFQ96I23 114 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 LRRC37BQ96QE4 947 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 CDRT15Q96T59 188 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 SOX7Q9BT81 388 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 OR2H1Q9GZK4 316 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 WNT5BQ9H1J7 359 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 KRCC1Q9NPI7 259 aaPredicted RBP17.75■□□□□ 0.43
CLN3-219ENST00000565778 ARL2BPQ9Y2Y0 163 aa17.75■□□□□ 0.43
CLN3-219ENST00000565778 C12orf71A8MTZ7 269 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 C17orf100A8MU93 164 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 AHCYL1O43865 530 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 NDUFB2O95178 105 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 MSR1P21757 451 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 GCH1P30793 250 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 MSX2P35548 267 aaPredicted RBP17.74■□□□□ 0.43
CLN3-219ENST00000565778 MAGEB1P43366 347 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 GPR6P46095 362 aaPredicted RBP17.74■□□□□ 0.43
CLN3-219ENST00000565778 ZNF718Q3SXZ3 478 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 FOXL2NBQ6ZUU3 175 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 HPS1Q92902 700 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 ZNF570Q96NI8 536 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 RERGLQ9H628 205 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 IL20RAQ9UHF4 553 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 TAGLN3Q9UI15 199 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 SIGLEC7Q9Y286 467 aa17.74■□□□□ 0.43
CLN3-219ENST00000565778 TRBV4-1A0A0J9YWV2 114 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 TPD52L2O43399 206 aaKnown RBP17.73■□□□□ 0.43
CLN3-219ENST00000565778 MT-ND5P03915 603 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 SCG5P05408 212 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 ACHEP22303 614 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 IGFBP5P24593 272 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 IL2RGP31785 369 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 OMPP47874 163 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 TMEM33P57088 247 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 SMIM11AP58511 58 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms