RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CD47Q08722 323 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 KLF10Q13118 480 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 SGCAQ16586 387 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 ALG10Q5BKT4 473 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 SHQ1Q6PI26 577 aaKnown RBP14.55□□□□□ -0.08
CLN3-216ENST00000565316 UNQ6126/PRO20091Q6UXV3 157 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 FOXL2NBQ6ZUU3 175 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 USP43Q70EL4 1123 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 LRRC75AQ8NAA5 344 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 AKR7LQ8NHP1 331 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 NSMAFQ92636 917 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 RAB39BQ96DA2 213 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 OR2H1Q9GZK4 316 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 WNT5BQ9H1J7 359 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 SAP30LQ9HAJ7 183 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 EIF3KQ9UBQ5 218 aaKnown RBP14.55□□□□□ -0.08
CLN3-216ENST00000565316 A4GNTQ9UNA3 340 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 WIPI2Q9Y4P8 454 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 CACNG2Q9Y698 323 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 C5orf49A4QMS7 147 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 FAM220BPB1ANY3 271 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 CLDN25C9JDP6 229 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 H3BSA7 217 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 PIP5K1CO60331 668 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 MPZL1O95297 269 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 IGHV1-46P01743 117 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 CST2P09228 141 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 CCNOP22674 350 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 GDI2P50395 445 aaKnown RBP14.54□□□□□ -0.08
CLN3-216ENST00000565316 RPL27P61353 136 aaKnown RBP14.54□□□□□ -0.08
CLN3-216ENST00000565316 ST3GAL3Q11203 375 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 FHL1Q13642 323 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 TSTQ16762 297 aaKnown RBP14.54□□□□□ -0.08
CLN3-216ENST00000565316 HFEQ30201 348 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 SPATA46Q5T0L3 261 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 FAM205BPQ63HN1 556 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 FNDC8Q8TC99 324 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 KLF14Q8TD94 323 aaPredicted RBP14.54□□□□□ -0.08
CLN3-216ENST00000565316 IPCEF1Q8WWN9 437 aaPredicted RBP14.54□□□□□ -0.08
CLN3-216ENST00000565316 BPIFA2Q96DR5 249 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 ELMOD3Q96FG2 381 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 PRRC1Q96M27 445 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 RBP7Q96R05 134 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 TMPRSS13Q9BYE2 586 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 SAR1AQ9NR31 198 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 KLHL21Q9UJP4 597 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 TIMM10BQ9Y5J6 103 aa14.54□□□□□ -0.08
CLN3-216ENST00000565316 J3QLI3 93 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 TPD52L2O43399 206 aaKnown RBP14.53□□□□□ -0.08
CLN3-216ENST00000565316 IFI30P13284 250 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 MAKP20794 623 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 LAP3P28838 519 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 GCH1P30793 250 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 COMPP49747 757 aaPredicted RBP14.53□□□□□ -0.08
CLN3-216ENST00000565316 ARFIP2P53365 341 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 HILS1P60008 231 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 ERVK-25P63136 954 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 SELENOWP63302 87 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 TOP3AQ13472 1001 aaPredicted RBP14.53□□□□□ -0.08
CLN3-216ENST00000565316 MAPRE2Q15555 327 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 C12orf54Q6X4T0 127 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 RFPL4BQ6ZWI9 263 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 C1QL2Q7Z5L3 287 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 ALDH16A1Q8IZ83 802 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 CLDN22Q8N7P3 220 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 SLC25A40Q8TBP6 338 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 ZNF418Q8TF45 676 aaPredicted RBP14.53□□□□□ -0.08
CLN3-216ENST00000565316 RAB1CQ92928 201 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 TIMD4Q96H15 378 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 OR2J1Q9GZK6 312 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 CYSLTR2Q9NS75 346 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 MAN2C1Q9NTJ4 1040 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 GID8Q9NWU2 228 aa14.53□□□□□ -0.08
CLN3-216ENST00000565316 LOC105371242A0A075B767 164 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 A0A0G2JMP0 313 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 A0A0X1KG70 313 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 ZSCAN5BA6NJL1 495 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 SPRY3O43610 288 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 UBOX5O94941 541 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 EPHA1P21709 976 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 FUT4P22083 530 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 CFPP27918 469 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 LIPAP38571 399 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 CTXN1P60606 82 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 PCBD1P61457 104 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 ANKDD1AQ495B1 522 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 LRRC23Q53EV4 343 aaPredicted RBP14.52□□□□□ -0.08
CLN3-216ENST00000565316 THSD4Q6ZMP0 1018 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 SYT9Q86SS6 491 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 MICU2Q8IYU8 434 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 PCYOX1LQ8NBM8 494 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 FAM156AQ8NDB6 213 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 OR2T12Q8NG77 320 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 OR4M2Q8NGB6 313 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 CGGBP1Q9UFW8 167 aaPredicted RBP14.52□□□□□ -0.08
CLN3-216ENST00000565316 PCDHB10Q9UN67 800 aa14.52□□□□□ -0.08
CLN3-216ENST00000565316 PLSCR5A0PG75 271 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 A6NIZ1 184 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 NGFP01138 241 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 CD55P08174 381 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms