RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZSCAN5BA6NJL1 495 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 CENPBD1B2RD01 187 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 J3QLI3 93 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 RBMXP38159 391 aaKnown RBP14.3□□□□□ -0.12
CLN3-211ENST00000564091 GDI2P50395 445 aaKnown RBP14.3□□□□□ -0.12
CLN3-211ENST00000564091 TAS2R41P59536 307 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 ERVK-25P63136 954 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 LCN2P80188 198 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 SPRNQ5BIV9 151 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 FAM209AQ5JX71 171 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 CCDC80Q76M96 950 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 HDDC2Q7Z4H3 204 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 BPIFB2Q8N4F0 458 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 ZDHHC22Q8N966 263 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 KLF14Q8TD94 323 aaPredicted RBP14.3□□□□□ -0.12
CLN3-211ENST00000564091 TMEM239Q8WW34 195 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 SUCNR1Q9BXA5 334 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 RIMS3Q9UJD0 308 aa14.3□□□□□ -0.12
CLN3-211ENST00000564091 PLSCR5A0PG75 271 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 UBOX5O94941 541 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 NGFP01138 241 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 RBM34P42696 430 aaKnown RBP14.29□□□□□ -0.12
CLN3-211ENST00000564091 LIMS1P48059 325 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 CD47Q08722 323 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 TOP3AQ13472 1001 aaPredicted RBP14.29□□□□□ -0.12
CLN3-211ENST00000564091 TTMPQ5BVD1 217 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 SLC25A47Q6Q0C1 308 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 RFPL4BQ6ZWI9 263 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 CLDN22Q8N7P3 220 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 ABHD4Q8TB40 342 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 RASSF5Q8WWW0 418 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 GEMIN6Q8WXD5 167 aaKnown RBP14.29□□□□□ -0.12
CLN3-211ENST00000564091 ZMYND19Q96E35 227 aaPredicted RBP14.29□□□□□ -0.12
CLN3-211ENST00000564091 ATP6V1G3Q96LB4 118 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 WNT5BQ9H1J7 359 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 DCAF16Q9NXF7 216 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 MEGF8Q7Z7M0 2845 aa14.29□□□□□ -0.12
CLN3-211ENST00000564091 PRSS23O95084 383 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 OR5F1O95221 314 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 VIMP08670 466 aaKnown RBP14.28□□□□□ -0.12
CLN3-211ENST00000564091 ZFP36P26651 326 aaKnown RBP14.28□□□□□ -0.12
CLN3-211ENST00000564091 LAP3P28838 519 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 OR1E2P47887 323 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 AWAT1Q58HT5 328 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 RABL3Q5HYI8 236 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 MBNL2Q5VZF2 373 aaKnown RBP14.28□□□□□ -0.12
CLN3-211ENST00000564091 NANOGP8Q6NSW7 305 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 SGMS2Q8NHU3 365 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 TSPEARQ8WU66 669 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 LIPHQ8WWY8 451 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 OR2H1Q9GZK4 316 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 EGLN1Q9GZT9 426 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 TXNIPQ9H3M7 391 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 SMURF2Q9HAU4 748 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 MSL2Q9HCI7 577 aa14.28□□□□□ -0.12
CLN3-211ENST00000564091 STX18Q9P2W9 335 aaKnown RBP14.28□□□□□ -0.12
CLN3-211ENST00000564091 FBP2O00757 339 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 PIP5K1CO60331 668 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 TSPAN19P0C672 248 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 PPP1CBP62140 327 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 ALG10Q5BKT4 473 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 FAM27BQ5VT28 67 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 ZNF774Q6NX45 483 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 DCLRE1CQ96SD1 692 aaKnown RBP14.27□□□□□ -0.13
CLN3-211ENST00000564091 NPHS2Q9NP85 383 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 INTS9Q9NV88 658 aaKnown RBP14.27□□□□□ -0.13
CLN3-211ENST00000564091 KLHL21Q9UJP4 597 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 BAG5Q9UL15 447 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 MED31Q9Y3C7 131 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 PPIAL4AQ9Y536 164 aa14.27□□□□□ -0.13
CLN3-211ENST00000564091 FSHBP01225 129 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 IGF2P01344 180 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 SBK2P0C263 348 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 GATA3P23771 443 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 FPR2P25090 351 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 UBA52P62987 128 aaKnown RBP14.26□□□□□ -0.13
CLN3-211ENST00000564091 SLC3A1Q07837 685 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 CYLC2Q14093 348 aaPredicted RBP14.26□□□□□ -0.13
CLN3-211ENST00000564091 UNQ6126/PRO20091Q6UXV3 157 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 IGFN1Q86VF2 1251 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 CALHM3Q86XJ0 350 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 TREML1Q86YW5 311 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 ST7LQ8TDW4 575 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 STON2Q8WXE9 905 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 DVL3Q92997 716 aaPredicted RBP14.26□□□□□ -0.13
CLN3-211ENST00000564091 C4orf45Q96LM5 186 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 RBP7Q96R05 134 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 ECSITQ9BQ95 431 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 ALG12Q9BV10 488 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 MMP26Q9NRE1 261 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 CYSLTR2Q9NS75 346 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 DDX28Q9NUL7 540 aaKnown RBP14.26□□□□□ -0.13
CLN3-211ENST00000564091 TIMM10BQ9Y5J6 103 aa14.26□□□□□ -0.13
CLN3-211ENST00000564091 A0A0G2JND7 137 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 NPIPB13A6NJU9 1138 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 NPIPB4C9JG80 1138 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 ADH4P08319 380 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 CST2P09228 141 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 FUT4P22083 530 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 RPL27P61353 136 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms