RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 BEST3Q8N1M1 668 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ZNF511Q8NB15 262 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 GJC3Q8NFK1 279 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 OR6N1Q8NGY5 312 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 OR2V1Q8NHB1 315 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 PTX4Q96A99 478 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 TMEM45BQ96B21 275 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ZC3HAV1LQ96H79 300 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 ARL5BQ96KC2 179 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 DERL3Q96Q80 235 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 KCNJ15Q99712 375 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ATF6BQ99941 703 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 BARHL1Q9BZE3 327 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 SRRQ9GZT4 340 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 HDHD2Q9H0R4 259 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 SMOC1Q9H4F8 434 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ABCB9Q9NP78 766 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ACKR4Q9NPB9 350 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ABCB10Q9NRK6 738 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 GLRX2Q9NS18 164 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 TAS2R8Q9NYW2 309 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 GLTPQ9NZD2 209 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 CYB5R1Q9UHQ9 305 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 MRM2Q9UI43 246 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 FBXL2Q9UKC9 423 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 DHDHQ9UQ10 334 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 RALGAPA1Q6GYQ0 2036 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 COL27A1Q8IZC6 1860 aaPredicted RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 NAP1L6A6NFF2 107 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 OR4C45A6NMZ5 311 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 IFITM5A6NNB3 132 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ZNF891A8MT65 544 aaPredicted RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 TBX1O43435 398 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ZNF354AO60765 605 aaPredicted RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 MTRF1O75570 445 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 SNAPC5O75971 98 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 FARS2O95363 451 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 PLGP00747 810 aaPredicted RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 ITGB2P05107 769 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 FTH1P19P0C7X4 201 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 OR8G3PP0DMU2 310 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 EPXP11678 715 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ZNF24P17028 368 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 TGM1P22735 817 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 CTSSP25774 331 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 GDF1P27539 372 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 CD96P40200 585 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 MMP15P51511 669 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 P2RY4P51582 365 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 MRPS34P82930 218 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 SCRN3Q0VDG4 424 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 MFAP5Q13361 173 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 IL18Q14116 193 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ARL6IP1Q15041 203 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 TAF13Q15543 124 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 GXYLT1Q4G148 440 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 CCDC157Q569K6 752 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 IDNKQ5T6J7 187 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ABLIM2Q6H8Q1 611 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 RAB12Q6IQ22 244 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 FOXL2NBQ6ZUU3 175 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 CREB3L2Q70SY1 520 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 PGAP1Q75T13 922 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 GPAT4Q86UL3 456 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 DTX1Q86Y01 620 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 LAX1Q8IWV1 398 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 Q8N402 240 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 FAM109AQ8N4B1 249 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ZFP41Q8N8Y5 198 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 OR9K2Q8NGE7 335 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 OR52H1Q8NGJ2 320 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 OR51L1Q8NGJ5 315 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 TRMT10AQ8TBZ6 339 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 ENKURQ8TC29 256 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 CPT1CQ8TCG5 803 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 TSEN15Q8WW01 171 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 HAS2Q92819 552 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 NKD1Q969G9 470 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 MCHR2Q969V1 340 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 SPTSSAQ969W0 71 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 TMEM106AQ96A25 262 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 S100A16Q96FQ6 103 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 TRMT61AQ96FX7 289 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 JSRP1Q96MG2 331 aaPredicted RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 TECTBQ96PL2 329 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 UQCC2Q9BRT2 126 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ABHD6Q9BV23 337 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 LINC00470Q9BZP3 86 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ABCG5Q9H222 651 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 SLCO5A1Q9H2Y9 848 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 RGCCQ9H4X1 137 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 RERGLQ9H628 205 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 ELOVL3Q9HB03 270 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 MOV10Q9HCE1 1003 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 DDX28Q9NUL7 540 aaKnown RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 FOXJ2Q9P0K8 574 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 B3GAT1Q9P2W7 334 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 COMMD3Q9UBI1 195 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 GHRLQ9UBU3 117 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 NUFIP1Q9UHK0 495 aaKnown RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms