RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 THEM4Q5T1C6 240 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 BPIFB2Q8N4F0 458 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 CCL17Q92583 94 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 C1orf147Q96MC9 270 aaPredicted RBP13.89□□□□□ -0.19
CLN3-208ENST00000561505 POLR2J2Q9GZM3 115 aaKnown RBP13.89□□□□□ -0.19
CLN3-208ENST00000561505 POLR2J3Q9H1A7 115 aaKnown RBP13.89□□□□□ -0.19
CLN3-208ENST00000561505 ZMAT3Q9HA38 289 aaKnown RBP13.89□□□□□ -0.19
CLN3-208ENST00000561505 ZDHHC8Q9ULC8 765 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 A0A1W2PRG6 482 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 A8MXK9 166 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 BLOC1S5-TXNDC5H3BN57 136 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 FOXH1O75593 365 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 OR7A10O76100 309 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 IGHV2-70P01814 119 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 FUT1P19526 365 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 DRD4P21917 467 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 PRTN3P24158 256 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 DAP3P51398 398 aaKnown RBP13.88□□□□□ -0.19
CLN3-208ENST00000561505 CDK5R2Q13319 367 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 SPRNQ5BIV9 151 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 UNQ6126/PRO20091Q6UXV3 157 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 LRRC18Q8N456 261 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 SLC25A40Q8TBP6 338 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 HDAC2Q92769 488 aaKnown RBP13.88□□□□□ -0.19
CLN3-208ENST00000561505 GAL3ST1Q99999 423 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 OR2J1Q9GZK6 312 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 RABEP2Q9H5N1 569 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 NANOGQ9H9S0 305 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 INIPQ9NRY2 104 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 DDX28Q9NUL7 540 aaKnown RBP13.88□□□□□ -0.19
CLN3-208ENST00000561505 PCDHGB1Q9Y5G3 927 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 NPTNQ9Y639 398 aa13.88□□□□□ -0.19
CLN3-208ENST00000561505 F5H0A9 414 aaPredicted RBP13.87□□□□□ -0.19
CLN3-208ENST00000561505 CLDN34H7C241 214 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 F13BP05160 661 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 CST2P09228 141 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 GCH1P30793 250 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 CDAP32320 146 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 HSF2Q03933 536 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 TAF11Q15544 211 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 TMEM155Q4W5P6 130 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 KLF17Q5JT82 389 aaPredicted RBP13.87□□□□□ -0.19
CLN3-208ENST00000561505 TREML1Q86YW5 311 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 NKAIN4Q8IVV8 208 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 ZNF283Q8N7M2 679 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 RASSF5Q8WWW0 418 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 GPA33Q99795 319 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 EGLN1Q9GZT9 426 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 WNT5BQ9H1J7 359 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 TXNIPQ9H3M7 391 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 MMP26Q9NRE1 261 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 C20orf141Q9NUB4 165 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 PLEK2Q9NYT0 353 aa13.87□□□□□ -0.19
CLN3-208ENST00000561505 EIF3KQ9UBQ5 218 aaKnown RBP13.87□□□□□ -0.19
CLN3-208ENST00000561505 PURGQ9UJV8 347 aaKnown RBP13.87□□□□□ -0.19
CLN3-208ENST00000561505 PLSCR5A0PG75 271 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 C5orf49A4QMS7 147 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 HTR3EA5X5Y0 456 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 TRAPPC2LH3BP13 241 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 KPNA4O00629 521 aaPredicted RBP13.86□□□□□ -0.19
CLN3-208ENST00000561505 TPD52L2O43399 206 aaKnown RBP13.86□□□□□ -0.19
CLN3-208ENST00000561505 SPRY3O43610 288 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 SLC2A10O95528 541 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 NGFP01138 241 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 IGHMP01871 453 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 THRBP10828 461 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 UMPSP11172 480 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 NR2C1P13056 603 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 ZNF12P17014 697 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 TUBG1P23258 451 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 AQP2P41181 271 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 SLC6A9P48067 706 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 MTPNP58546 118 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 PPP1CBP62140 327 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 LCN2P80188 198 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 GLO1Q04760 184 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 OCLNQ16625 522 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 CYP51A1Q16850 503 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 INTS11Q5TA45 600 aaKnown RBP13.86□□□□□ -0.19
CLN3-208ENST00000561505 RFPL4BQ6ZWI9 263 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 DHDDSQ86SQ9 333 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 SYT9Q86SS6 491 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 LRRC28Q86X40 367 aaPredicted RBP13.86□□□□□ -0.19
CLN3-208ENST00000561505 SIGLECL1Q8N7X8 197 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 MOSPD2Q8NHP6 518 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 VANGL1Q8TAA9 524 aaPredicted RBP13.86□□□□□ -0.19
CLN3-208ENST00000561505 FNDC8Q8TC99 324 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 ALG12Q9BV10 488 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 OR2H1Q9GZK4 316 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 KCNN2Q9H2S1 579 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 PATZ1Q9HBE1 687 aaKnown RBP13.86□□□□□ -0.19
CLN3-208ENST00000561505 NPHS2Q9NP85 383 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 CCNB1IP1Q9NPC3 277 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 TUBG2Q9NRH3 451 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 NUP50Q9UKX7 468 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 HIF3AQ9Y2N7 669 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 NDUFAF1Q9Y375 327 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 INSIG2Q9Y5U4 225 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 TGP01266 2768 aa13.86□□□□□ -0.19
CLN3-208ENST00000561505 GMNCA6NCL1 334 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms