RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SNX33Q8WV41 574 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 C1orf159Q96HA4 380 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 POM121L2Q96KW2 1035 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 ALG12Q9BV10 488 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 C19orf24Q9BVV8 132 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 BCL2L14Q9BZR8 327 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 RACGAP1Q9H0H5 632 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 SMURF2Q9HAU4 748 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 MAN2C1Q9NTJ4 1040 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 SLCO1C1Q9NYB5 712 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 EIF3KQ9UBQ5 218 aaKnown RBP8.73□□□□□ -1.01
LDLR-214ENST00000560628 AP3M1Q9Y2T2 418 aa8.73□□□□□ -1.01
LDLR-214ENST00000560628 A0A087WUU8 490 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 A0A1W2PPL8 197 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 HTR3EA5X5Y0 456 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 NPIPB13A6NJU9 1138 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 B4DSR2 109 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 NPIPB4C9JG80 1138 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 H7C1C5 153 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 NME4O00746 187 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 SLC22A2O15244 555 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 SPRY3O43610 288 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 CCDC22O60826 627 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 SERPINA1P01009 418 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 SCG5P05408 212 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 RPL4P36578 427 aaKnown RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 MPV17P39210 176 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 MDH1P40925 334 aaKnown RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 GUCA1AP43080 201 aaPredicted RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 GPR4P46093 362 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 GSK3BP49841 420 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 DVL1P1P54792 670 aaPredicted RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 LMO4P61968 165 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 LCN6P62502 163 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 MRPS11P82912 194 aaKnown RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 TAF11Q15544 211 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 ZNF718Q3SXZ3 478 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 IFI44LQ53G44 452 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 HSP90B2PQ58FF3 399 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 AVPI1Q5T686 147 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 ZNF774Q6NX45 483 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 UGT2A3Q6UWM9 527 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 USP51Q70EK9 711 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 CBLL1Q75N03 491 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 ARPINQ7Z6K5 226 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 TREML1Q86YW5 311 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 ZNF101Q8IZC7 436 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 OFCC1Q8IZS5 231 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 SLC25A40Q8TBP6 338 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 GEMIN6Q8WXD5 167 aaKnown RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 ACOT11Q8WXI4 607 aaPredicted RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 HOPXQ9BPY8 73 aaPredicted RBP8.72□□□□□ -1.01
LDLR-214ENST00000560628 ZNF416Q9BWM5 594 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 OR2H1Q9GZK4 316 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 WNT5BQ9H1J7 359 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 CCDC134Q9H6E4 229 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 EFCAB1Q9HAE3 211 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 DECR2Q9NUI1 292 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 HIF1ANQ9NWT6 349 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 TIMM10BQ9Y5J6 103 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 CACNG2Q9Y698 323 aa8.72□□□□□ -1.01
LDLR-214ENST00000560628 IGHV1-69-2A0A0G2JMI3 117 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 A6NIZ1 184 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 CDC42EP2O14613 210 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 NGFP01138 241 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 IGHV3-13P01766 116 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 IGHMP01871 453 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 CST2P09228 141 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 GAAP10253 952 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 NR2C1P13056 603 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 ZNF26P17031 533 aaPredicted RBP8.71□□□□□ -1.02
LDLR-214ENST00000560628 GCH1P30793 250 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 CRYBB2P43320 205 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 ZNF81P51508 661 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 RAP1BP61224 184 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 PPP1CBP62140 327 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 RAP1AP62834 184 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 ENDOGQ14249 297 aaKnown RBP8.71□□□□□ -1.02
LDLR-214ENST00000560628 MOGQ16653 247 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 PCGF3Q3KNV8 242 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 TMEM255AQ5JRV8 349 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 LIPNQ5VXI9 398 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 OTPQ5XKR4 325 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 MBOAT2Q6ZWT7 520 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 ZNF771Q7L3S4 317 aaPredicted RBP8.71□□□□□ -1.02
LDLR-214ENST00000560628 RRM2BQ7LG56 351 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 TSEN54Q7Z6J9 526 aaKnown RBP8.71□□□□□ -1.02
LDLR-214ENST00000560628 GLCCI1Q86VQ1 547 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 ALDH16A1Q8IZ83 802 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 RNF113BQ8IZP6 322 aaKnown RBP8.71□□□□□ -1.02
LDLR-214ENST00000560628 ABHD4Q8TB40 342 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 FAM162AQ96A26 154 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 TMEM186Q96B77 213 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 MARS2Q96GW9 593 aaKnown RBP8.71□□□□□ -1.02
LDLR-214ENST00000560628 HSH2DQ96JZ2 352 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 Q96M85 177 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 LRRC37BQ96QE4 947 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 ELAC2Q9BQ52 826 aaKnown RBP8.71□□□□□ -1.02
LDLR-214ENST00000560628 OR2J1Q9GZK6 312 aa8.71□□□□□ -1.02
LDLR-214ENST00000560628 NMNAT1Q9HAN9 279 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms