RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SLC11A1P49279 550 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 LHX2P50458 406 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 TDGF1P3P51864 188 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 UGT2B15P54855 530 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 LYZP61626 148 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 SLC7A9P82251 487 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 SP4Q02446 784 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 MADCAM1Q13477 382 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 DOC2AQ14183 400 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 RCAN2Q14206 197 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 GABRA6Q16445 453 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 HSDL1Q3SXM5 330 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 PTPN20Q4JDL3 420 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 LYPD2Q6UXB3 125 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 C12orf54Q6X4T0 127 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 CERS6Q6ZMG9 384 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 SSX9Q7RTT3 188 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 FAM122BQ7Z309 247 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 KRTAP11-1Q8IUC1 163 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 ARRDC1Q8N5I2 433 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 FAM71E2Q8N5Q1 922 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 ZNF433Q8N7K0 673 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 Q8N9W7 124 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 TTC29Q8NA56 475 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 CCDC54Q8NEL0 328 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 OR9G4Q8NGQ1 327 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 OR1N2Q8NGR9 330 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 OR2G3Q8NGZ4 309 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 GLYATL2Q8WU03 294 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 TSEN15Q8WW01 171 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 GEMIN6Q8WXD5 167 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 PIBF1Q8WXW3 757 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 EEF1AKMT3Q96AZ1 226 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 ISG20Q96AZ6 181 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 FAM3DQ96BQ1 224 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 C8orf44Q96CB5 159 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 PIK3IP1Q96FE7 263 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 AURKBQ96GD4 344 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 ZNF414Q96IQ9 312 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 XPO6Q96QU8 1125 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 P2RX4Q99571 388 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 KCTD14Q9BQ13 255 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 NRIP2Q9BQI9 281 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 HDHD3Q9BSH5 251 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 OSBPL10Q9BXB5 764 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 ANKRD60Q9BZ19 345 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 CDC42EP4Q9H3Q1 356 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 RANBP3Q9H6Z4 567 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 PDFQ9HBH1 243 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 TMEM165Q9HC07 324 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 MRPS30Q9NP92 439 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 ZNF331Q9NQX6 463 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 PXMP2Q9NR77 195 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 CTPS2Q9NRF8 586 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 SAMSN1Q9NSI8 373 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 MRPL22Q9NWU5 206 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 MTCH1Q9NZJ7 389 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 UXTQ9UBK9 157 aaPredicted RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 GOLT1BQ9Y3E0 138 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 N6AMT1Q9Y5N5 214 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 NACAE9PAV3 2078 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 DOCK8Q8NF50 2099 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 GAKO14976 1311 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 NFASCO94856 1347 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 MAP3K15Q6ZN16 1313 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 PRRC2AP48634 2157 aaKnown RBP1.1□□□□□ -2.23
USP3-209ENST00000558925 MEGF6O75095 1541 aa1.1□□□□□ -2.23
USP3-209ENST00000558925 TSPOAP1O95153 1857 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 PDS5BQ9NTI5 1447 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 IGLV1-36A0A0B4J1U3 117 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 A0A0B4J2A0 478 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 KBTBD11-OT1A0A1B0GTJ5 212 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 NCBP2LA6PVI3 153 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 GABRR3A8MPY1 467 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 SMKR1H3BMG3 65 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 H7C1H1 209 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 L7N2F9 121 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 GABRPO00591 440 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 NDUFAB1O14561 156 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 DYNC1I1O14576 645 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ZBTB5O15062 677 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 SLC31A2O15432 143 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ARG1P05089 322 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 FABP3P05413 133 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 EIF4EP06730 217 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 UBTFL6P0CB48 400 aaPredicted RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 OR5H8P0DN80 308 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CALM1P0DP23 149 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CALM2P0DP24 149 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CALM3P0DP25 149 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CRISP2P16562 243 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 GGT1P19440 569 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 EIF2S2P20042 333 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 SLC26A3P40879 764 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CXCL5P42830 114 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 MAGEA1P43355 309 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CSNK1DP48730 415 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CX3CR1P49238 355 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 MRPL19P49406 292 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 SERPINB8P50452 374 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms