RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CHAF1BQ13112 559 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 TP53I3Q53FA7 332 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 ATPAF1Q5TC12 328 aaPredicted RBP9.87□□□□□ -0.83
USP3-206ENST00000558157 MRM1Q6IN84 353 aaKnown RBP9.87□□□□□ -0.83
USP3-206ENST00000558157 SSX6Q7RTT6 188 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 ARRDC1Q8N5I2 433 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 OR4K17Q8NGC6 315 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 OR4K14Q8NGD5 310 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 OR4C6Q8NH72 309 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 AMDHD1Q96NU7 426 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 MAP3K3Q99759 626 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 SSX3Q99909 188 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 TWSG1Q9GZX9 223 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 SLC17A5Q9NRA2 495 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 PARPBPQ9NWS1 579 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 CACFD1Q9UGQ2 172 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 ASF1AQ9Y294 204 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 TMEM184BQ9Y519 407 aaPredicted RBP9.87□□□□□ -0.83
USP3-206ENST00000558157 TMEM72A0PK05 275 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 METTL12A8MUP2 240 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 EIF1AYO14602 144 aaKnown RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 SLC35G4P0C7Q5 338 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 THEGLP0DJG4 465 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 PTHLHP12272 177 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 ACKR3P25106 362 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 MPIP34949 423 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 EIF1AXP47813 144 aaKnown RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 CDX1P47902 265 aaPredicted RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 SLC6A9P48067 706 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 DHRS2Q13268 280 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 RBM39Q14498 530 aaKnown RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 SZRD1Q7Z422 152 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 TMEM229BQ8NBD8 167 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 OR10H5Q8NGA6 315 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 OR5AR1Q8NGP9 310 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 AKR7LQ8NHP1 331 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 SNX33Q8WV41 574 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 SLAMF9Q96A28 289 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 CNN2Q99439 309 aaKnown RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 SLCO5A1Q9H2Y9 848 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 GLIPR2Q9H4G4 154 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 GPR27Q9NS67 375 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 FAM86C1Q9NVL1 165 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 ZNF223Q9UK11 482 aaPredicted RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 GPR55Q9Y2T6 319 aaPredicted RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 TNFRSF10CO14798 259 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 ZNF208O43345 1280 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 THY1P04216 161 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 MAOAP21397 527 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 CD27P26842 260 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 NTSP30990 170 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 PRSS3P35030 304 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 ATP1B3P54709 279 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 DVL1P1P54792 670 aaPredicted RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 RPS15P62841 145 aaKnown RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 BEX5Q5H9J7 111 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 PYY3Q5JQD4 70 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 TMEM205Q6UW68 189 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 UNQ6126/PRO20091Q6UXV3 157 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 ZNF227Q86WZ6 799 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 NUDT13Q86X67 352 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 PAQR4Q8N4S7 273 aaPredicted RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 CADM4Q8NFZ8 388 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 OR1J2Q8NGS2 313 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 ZBTB8AQ96BR9 441 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 RBM18Q96H35 190 aaKnown RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 NEU1Q99519 415 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 ACTRT3Q9BYD9 372 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 CHST5Q9GZS9 411 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 LAT2Q9GZY6 243 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 PCED1AQ9H1Q7 454 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 TMEM231Q9H6L2 316 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 PLAGL1Q9UM63 463 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 SH2B3Q9UQQ2 575 aa9.86□□□□□ -0.83
USP3-206ENST00000558157 NOP16Q9Y3C1 178 aaKnown RBP9.86□□□□□ -0.83
USP3-206ENST00000558157 TVP23AA6NH52 213 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 BCAT2O15382 392 aaPredicted RBP9.85□□□□□ -0.83
USP3-206ENST00000558157 FBXO24O75426 580 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 RPN2P04844 631 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 HKR1P10072 659 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 AK4P27144 223 aaPredicted RBP9.85□□□□□ -0.83
USP3-206ENST00000558157 PKIAP61925 76 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 CRMP1Q14194 572 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 ELAVL1Q15717 326 aaKnown RBP9.85□□□□□ -0.83
USP3-206ENST00000558157 PRAMEF17Q5VTA0 474 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 FAHD2BQ6P2I3 314 aaPredicted RBP9.85□□□□□ -0.83
USP3-206ENST00000558157 ARHGAP11AQ6P4F7 1023 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 STAC2Q6ZMT1 411 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 LRRTM1Q86UE6 522 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 VRK2Q86Y07 508 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 SLC35F3Q8IY50 421 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 CDK20Q8IZL9 346 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 OR9A1PQ8NGU1 263 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 CCL4L1Q8NHW4 92 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 FOXRED1Q96CU9 486 aaPredicted RBP9.85□□□□□ -0.83
USP3-206ENST00000558157 FAHD2AQ96GK7 314 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 PDCD1LG2Q9BQ51 273 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 MS4A8Q9BY19 250 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 SLC25A18Q9H1K4 315 aa9.85□□□□□ -0.83
USP3-206ENST00000558157 RPS10P5Q9NQ39 176 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms