RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 AIMP2Q13155 320 aaKnown RBP15.03■□□□□ -0
LDLR-206ENST00000557958 SLC17A1Q14916 467 aa15.03■□□□□ -0
LDLR-206ENST00000557958 ETFDHQ16134 617 aa15.03■□□□□ -0
LDLR-206ENST00000557958 Q499Y3 187 aa15.03■□□□□ -0
LDLR-206ENST00000557958 FDX2Q6P4F2 183 aa15.03■□□□□ -0
LDLR-206ENST00000557958 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.03■□□□□ -0
LDLR-206ENST00000557958 SLC22A16Q86VW1 577 aa15.03■□□□□ -0
LDLR-206ENST00000557958 ZNF676Q8N7Q3 588 aa15.03■□□□□ -0
LDLR-206ENST00000557958 FAM83FQ8NEG4 500 aaPredicted RBP15.03■□□□□ -0
LDLR-206ENST00000557958 OR2G2Q8NGZ5 317 aa15.03■□□□□ -0
LDLR-206ENST00000557958 UBL7Q96S82 380 aaPredicted RBP15.03■□□□□ -0
LDLR-206ENST00000557958 SRRQ9GZT4 340 aa15.03■□□□□ -0
LDLR-206ENST00000557958 CCDC86Q9H6F5 360 aaKnown RBP15.03■□□□□ -0
LDLR-206ENST00000557958 SLCO1C1Q9NYB5 712 aa15.03■□□□□ -0
LDLR-206ENST00000557958 KLHL13Q9P2N7 655 aa15.03■□□□□ -0
LDLR-206ENST00000557958 ZNF726A6NNF4 738 aa15.03■□□□□ -0
LDLR-206ENST00000557958 TRAF3IP2O43734 574 aaPredicted RBP15.03■□□□□ -0
LDLR-206ENST00000557958 HPGDSO60760 199 aa15.03■□□□□ -0
LDLR-206ENST00000557958 RPS27P42677 84 aaKnown RBP15.03■□□□□ -0
LDLR-206ENST00000557958 DNASE1L1P49184 302 aa15.03■□□□□ -0
LDLR-206ENST00000557958 CCR9P51686 369 aa15.03■□□□□ -0
LDLR-206ENST00000557958 FMODQ06828 376 aa15.03■□□□□ -0
LDLR-206ENST00000557958 C19orf57Q0VDD7 668 aa15.03■□□□□ -0
LDLR-206ENST00000557958 LINC00696Q6ZRV3 163 aa15.03■□□□□ -0
LDLR-206ENST00000557958 LRRC28Q86X40 367 aaPredicted RBP15.03■□□□□ -0
LDLR-206ENST00000557958 OR52N5Q8NH56 324 aa15.03■□□□□ -0
LDLR-206ENST00000557958 DCBLD2Q96PD2 775 aa15.03■□□□□ -0
LDLR-206ENST00000557958 MRPL13Q9BYD1 178 aaKnown RBP15.03■□□□□ -0
LDLR-206ENST00000557958 ELOVL3Q9HB03 270 aa15.03■□□□□ -0
LDLR-206ENST00000557958 FRRS1LQ9P0K9 344 aa15.03■□□□□ -0
LDLR-206ENST00000557958 BOKQ9UMX3 212 aaPredicted RBP15.03■□□□□ -0
LDLR-206ENST00000557958 ANKRD61A6NGH8 418 aa15.02■□□□□ -0
LDLR-206ENST00000557958 FAM25AB3EWG3 89 aa15.02■□□□□ -0
LDLR-206ENST00000557958 FAM25CB3EWG5 89 aa15.02■□□□□ -0
LDLR-206ENST00000557958 FAM25GB3EWG6 89 aa15.02■□□□□ -0
LDLR-206ENST00000557958 KLK10O43240 276 aa15.02■□□□□ -0
LDLR-206ENST00000557958 ZNF254O75437 659 aa15.02■□□□□ -0
LDLR-206ENST00000557958 EVX1P49640 407 aa15.02■□□□□ -0
LDLR-206ENST00000557958 GPR85P60893 370 aa15.02■□□□□ -0
LDLR-206ENST00000557958 ZNF79Q15937 498 aa15.02■□□□□ -0
LDLR-206ENST00000557958 PCK2Q16822 640 aa15.02■□□□□ -0
LDLR-206ENST00000557958 PYDC2Q56P42 97 aa15.02■□□□□ -0
LDLR-206ENST00000557958 CNIH2Q6PI25 160 aa15.02■□□□□ -0
LDLR-206ENST00000557958 OR14L1PQ8NHC6 308 aa15.02■□□□□ -0
LDLR-206ENST00000557958 GPR148Q8TDV2 347 aa15.02■□□□□ -0
LDLR-206ENST00000557958 RNF128Q8TEB7 428 aa15.02■□□□□ -0
LDLR-206ENST00000557958 PSMF1Q92530 271 aa15.02■□□□□ -0
LDLR-206ENST00000557958 FOXN4Q96NZ1 517 aa15.02■□□□□ -0
LDLR-206ENST00000557958 ABHD6Q9BV23 337 aa15.02■□□□□ -0
LDLR-206ENST00000557958 EMC6Q9BV81 110 aa15.02■□□□□ -0
LDLR-206ENST00000557958 NOX4Q9NPH5 578 aa15.02■□□□□ -0
LDLR-206ENST00000557958 ABRACLQ9P1F3 81 aa15.02■□□□□ -0
LDLR-206ENST00000557958 LRFN1Q9P244 771 aa15.02■□□□□ -0
LDLR-206ENST00000557958 MRPS18CQ9Y3D5 142 aaKnown RBP15.02■□□□□ -0
LDLR-206ENST00000557958 CELSR3Q9NYQ7 3312 aa15.02□□□□□ -0.01
LDLR-206ENST00000557958 RAF1P04049 648 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 PGA4P0DJD7 388 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 PGA3P0DJD8 388 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 SRMP19623 302 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 CNR1P21554 472 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 SCN1BQ07699 218 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 DEGS2Q6QHC5 323 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 LRRN1Q6UXK5 716 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 NHLRC1Q6VVB1 395 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 NR2C2APQ86WQ0 139 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 HSD17B8Q92506 261 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 RNF166Q96A37 237 aaPredicted RBP15.01□□□□□ -0.01
LDLR-206ENST00000557958 MAP6Q96JE9 813 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 C4orf45Q96LM5 186 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 DERL3Q96Q80 235 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 SDHCQ99643 169 aaPredicted RBP15.01□□□□□ -0.01
LDLR-206ENST00000557958 UTP23Q9BRU9 249 aaKnown RBP15.01□□□□□ -0.01
LDLR-206ENST00000557958 ING1Q9UK53 422 aaPredicted RBP15.01□□□□□ -0.01
LDLR-206ENST00000557958 OR4C45A6NMZ5 311 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 CDK2AP1O14519 115 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 AZGP1P25311 298 aaKnown RBP15.01□□□□□ -0.01
LDLR-206ENST00000557958 LAP3P28838 519 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 H3F3AP84243 136 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 CD300CQ08708 224 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 LRRC69Q6ZNQ3 347 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 GALNT16Q8N428 558 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 TCF7L1Q9HCS4 588 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 ZFP64Q9NPA5 681 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 C14orf119Q9NWQ9 140 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 PLA2G3Q9NZ20 509 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 B4GALT7Q9UBV7 327 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 DCHS1Q96JQ0 3298 aa15.01□□□□□ -0.01
LDLR-206ENST00000557958 A0A0G2JK05 382 aa15□□□□□ -0.01
LDLR-206ENST00000557958 TRBV5-5A0A0J9YX44 114 aa15□□□□□ -0.01
LDLR-206ENST00000557958 A0A1W2PPK0 400 aa15□□□□□ -0.01
LDLR-206ENST00000557958 NPIPA2E9PIF3 369 aa15□□□□□ -0.01
LDLR-206ENST00000557958 NPIPA3F8WFD2 350 aa15□□□□□ -0.01
LDLR-206ENST00000557958 LINC01387J3KSC0 135 aa15□□□□□ -0.01
LDLR-206ENST00000557958 GPR171O14626 319 aa15□□□□□ -0.01
LDLR-206ENST00000557958 CCL11P51671 97 aa15□□□□□ -0.01
LDLR-206ENST00000557958 OR10A3P58181 314 aa15□□□□□ -0.01
LDLR-206ENST00000557958 CAMK2DQ13557 499 aa15□□□□□ -0.01
LDLR-206ENST00000557958 IL18Q14116 193 aa15□□□□□ -0.01
LDLR-206ENST00000557958 POU4F3Q15319 338 aa15□□□□□ -0.01
LDLR-206ENST00000557958 CHAC2Q8WUX2 184 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms