RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RAB12Q6IQ22 244 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 SLC16A9Q7RTY1 509 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 OR6M1Q8NGM8 313 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 FAM3DQ96BQ1 224 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 ST6GALNAC5Q9BVH7 336 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 MBD2Q9UBB5 411 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 UPB1Q9UBR1 384 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 TLX3O43711 291 aaPredicted RBP13.45□□□□□ -0.26
CUX1-215ENST00000556210 SCGB1D2O95969 90 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 CALCBP10092 127 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 S100A11P31949 105 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 PPICP45877 212 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 CXCL12P48061 93 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 MANEAQ5SRI9 462 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 CCDC107Q8WV48 283 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 YIPF5Q969M3 257 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 PRRG4Q9BZD6 226 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 PTGES2Q9H7Z7 377 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 B9D1Q9UPM9 204 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 LINC00862A6NCI5 91 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 SHOXO15266 292 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 SC5DO75845 299 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 OTX2P32243 289 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 RBM34P42696 430 aaKnown RBP13.45□□□□□ -0.26
CUX1-215ENST00000556210 SELENOPP49908 381 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 SLC51BQ86UW2 128 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 OR1L3Q8NH93 324 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 C15orf40Q8WUR7 153 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 SCMH1Q96GD3 660 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 MNTQ99583 582 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 MESP1Q9BRJ9 268 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 SELENOIQ9C0D9 397 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 HRASLSQ9HDD0 168 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 HHLA2Q9UM44 414 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 LOC105371267A0A1B0GV96 52 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 KRBOX1C9JBD0 128 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 WDPCPO95876 746 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 GLI4P10075 376 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 ZNF35P13682 527 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 TAS2R20P59543 309 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 SRYQ05066 204 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 GPR139Q6DWJ6 353 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 GSG1LQ6UXU4 331 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 NPEPL1Q8NDH3 523 aa13.45□□□□□ -0.26
CUX1-215ENST00000556210 TRAV36DV7A0A075B6V5 113 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 MEIKINA0A087WXM9 373 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 KNG1P01042 644 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 LINC00303Q3SY05 128 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 ZMIZ1Q9ULJ6 1067 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 KLHDC2Q9Y2U9 406 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 ZNF736B4DX44 427 aaPredicted RBP13.44□□□□□ -0.26
CUX1-215ENST00000556210 F5H0A9 414 aaPredicted RBP13.44□□□□□ -0.26
CUX1-215ENST00000556210 TGFBR3LH3BV60 316 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 CDK2AP1O14519 115 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 OR2T1O43869 369 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 CFDP00746 253 aaPredicted RBP13.44□□□□□ -0.26
CUX1-215ENST00000556210 IL9P15248 144 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 SLC6A8P48029 635 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 HAGHLQ6PII5 290 aaPredicted RBP13.44□□□□□ -0.26
CUX1-215ENST00000556210 ARIH2OSQ8N7S6 290 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 PGAM5Q96HS1 289 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 RADILQ96JH8 1075 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 POTEKPQ9BYX7 375 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 GHITMQ9H3K2 345 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 PTRH2Q9Y3E5 179 aaKnown RBP13.44□□□□□ -0.26
CUX1-215ENST00000556210 TRIOO75962 3097 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 SULT2B1O00204 365 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 CD3DP04234 171 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 SFTPBP07988 381 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 ABCD3P28288 659 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 CDAP32320 146 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 ELAVL1Q15717 326 aaKnown RBP13.44□□□□□ -0.26
CUX1-215ENST00000556210 SLC25A30Q5SVS4 291 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.44□□□□□ -0.26
CUX1-215ENST00000556210 LIX1LQ8IVB5 337 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 TM4SF19Q96DZ7 209 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 ARL5BQ96KC2 179 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 GPR137Q96N19 417 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 BANF2Q9H503 90 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 POLEQ07864 2286 aa13.44□□□□□ -0.26
CUX1-215ENST00000556210 H3BUI4 141 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 CRTAPO75718 401 aaPredicted RBP13.43□□□□□ -0.26
CUX1-215ENST00000556210 RASGEF1BQ0VAM2 473 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 NKAIN1Q4KMZ8 207 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 TMEM205Q6UW68 189 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 RHOUQ7L0Q8 258 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 UEVLDQ8IX04 471 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 OR14A16Q8NHC5 309 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 CCDC74AQ96AQ1 378 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 SLC41A2Q96JW4 573 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 TREM1Q9NP99 234 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 ZNF223Q9UK11 482 aaPredicted RBP13.43□□□□□ -0.26
CUX1-215ENST00000556210 MTCL1Q9Y4B5 1905 aaKnown RBP13.43□□□□□ -0.26
CUX1-215ENST00000556210 SLC33A1O00400 549 aaPredicted RBP13.43□□□□□ -0.26
CUX1-215ENST00000556210 S100A9P06702 114 aaKnown RBP13.43□□□□□ -0.26
CUX1-215ENST00000556210 PI3P19957 117 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 BDH1Q02338 343 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 DMKNQ6E0U4 476 aaPredicted RBP13.43□□□□□ -0.26
CUX1-215ENST00000556210 BPIFB2Q8N4F0 458 aa13.43□□□□□ -0.26
CUX1-215ENST00000556210 INO80EQ8NBZ0 244 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms