RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 SMR3AQ99954 134 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 KCNN2Q9H2S1 579 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 PLK3Q9H4B4 646 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 GSX1Q9H4S2 264 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 SLC7A8Q9UHI5 535 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 SAMHD1Q9Y3Z3 626 aaKnown RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 U3KQV3 271 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 IQCMA0A1B0GVH7 501 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 AQP12BA6NM10 295 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 SLC16A7O60669 478 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 DNAJC8O75937 253 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 LY6HO94772 140 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 CCNB2O95067 398 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 SNAP29O95721 258 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 TXNDC12O95881 172 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 SCG5P05408 212 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 CST2P09228 141 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 RAP2AP10114 183 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 APEX1P27695 318 aaKnown RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 HSF2Q03933 536 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 PLP2Q04941 152 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 FLOT2Q14254 428 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 RAB35Q15286 201 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 TBC1D28Q2M2D7 210 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 RFX4Q33E94 735 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 UGT2A3Q6UWM9 527 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 AQP12AQ8IXF9 295 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 CPEB3Q8NE35 698 aaKnown RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 AKR7LQ8NHP1 331 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 MRPL24Q96A35 216 aaKnown RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 SAMD8Q96LT4 415 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 ERMAPQ96PL5 475 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 SORCS2Q96PQ0 1159 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 IFT27Q9BW83 186 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 OR2H1Q9GZK4 316 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 C1orf198Q9H425 327 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 RERGLQ9H628 205 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 REEP1Q9H902 201 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 CDH20Q9HBT6 801 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 EMC7Q9NPA0 242 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 POLE4Q9NR33 117 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 VSX1Q9NZR4 365 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 SPEF1Q9Y4P9 236 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 CDH10Q9Y6N8 788 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 PMF1-BGLAPU3KQ54 211 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 ARFGEF3Q5TH69 2177 aa11.83□□□□□ -0.52
SHMT2-219ENST00000555563 ZNF469Q96JG9 3925 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 FLNAP21333 2647 aaKnown RBP11.83□□□□□ -0.52
SHMT2-219ENST00000555563 DHRS12A0PJE2 317 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 ARPC3O15145 178 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 FAM157BP0CG42 384 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 GLRXP35754 106 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 CDKN2AP42771 156 aaKnown RBP11.82□□□□□ -0.52
SHMT2-219ENST00000555563 PPOXP50336 477 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 EFNA4P52798 201 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 RPS23P62266 143 aaKnown RBP11.82□□□□□ -0.52
SHMT2-219ENST00000555563 PSG4Q00888 419 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 BIVMQ86UB2 503 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 LINC00471Q8N535 108 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 ZNF525Q8N782 197 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 AQP11Q8NBQ7 271 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 CANT1Q8WVQ1 401 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 DOK1Q99704 481 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 SYT3Q9BQG1 590 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 ZNF416Q9BWM5 594 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 CHID1Q9BWS9 393 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 MRPL37Q9BZE1 423 aaKnown RBP11.82□□□□□ -0.52
SHMT2-219ENST00000555563 WNT5BQ9H1J7 359 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 OR51B6Q9H340 312 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 EGLN3Q9H6Z9 239 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 POMPQ9Y244 141 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 CMAHPQ9Y471 501 aa11.82□□□□□ -0.52
SHMT2-219ENST00000555563 ACANP16112 2415 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 NIPBLQ6KC79 2804 aaeCLIP11.81□□□□□ -0.52
SHMT2-219ENST00000555563 TMEM129A0AVI4 362 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 VSTM5A8MXK1 200 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 RNF223E7ERA6 249 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 KHDRBS3O75525 346 aaKnown RBP11.81□□□□□ -0.52
SHMT2-219ENST00000555563 PTHP01270 115 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 GASTP01350 101 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 HIST1H1CP16403 213 aaKnown RBP11.81□□□□□ -0.52
SHMT2-219ENST00000555563 STOMP27105 288 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 APLNRP35414 380 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 GUCA1AP43080 201 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-219ENST00000555563 ERVS71-1P61550 626 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 DBPQ10586 325 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-219ENST00000555563 CLEC12AQ5QGZ9 265 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 OTPQ5XKR4 325 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 CLEC2AQ6UVW9 174 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 JAZF1Q86VZ6 243 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 GLB1L2Q8IW92 636 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 OR52L1Q8NGH7 329 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 OR8D4Q8NGM9 314 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 OR1J2Q8NGS2 313 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 OR4K13Q8NH42 304 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 POM121L2Q96KW2 1035 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 TSSK2Q96PF2 358 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 NMNAT3Q96T66 252 aa11.81□□□□□ -0.52
SHMT2-219ENST00000555563 VRK1Q99986 396 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-219ENST00000555563 CADM1Q9BY67 442 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms