RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 DEFB107AQ8IZN7 70 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 LRRC18Q8N456 261 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 CPEB3Q8NE35 698 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 POP5Q969H6 163 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 RSRC1Q96IZ7 334 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 POM121L2Q96KW2 1035 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 ZNF570Q96NI8 536 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 MUC13Q9H3R2 512 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 CCNB1IP1Q9NPC3 277 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 REV1Q9UBZ9 1251 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 ADAM18Q9Y3Q7 739 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 TEX13CA0A0J9YWL9 993 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 XKRYO14609 159 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 STAMBPO95630 424 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 ADRA2AP08913 450 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 COX5BP10606 129 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 TCN1P20061 433 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 FPR3P25089 353 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 STOMP27105 288 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 APLNRP35414 380 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 YLPM1P49750 1951 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 GZMKP49863 264 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 UCP2P55851 309 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 FXYD6P3P58550 94 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 ERVK-25P63136 954 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 HSF2Q03933 536 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 CHD3Q12873 2000 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 RIN1Q13671 783 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 RGS7BPQ6MZT1 257 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 UNQ6126/PRO20091Q6UXV3 157 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 DPY19L2P2Q6ZN68 376 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 FITM2Q8N6M3 262 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 CLDN22Q8N7P3 220 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 NSMAFQ92636 917 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 MCUR1Q96AQ8 359 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 Q96M85 177 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 SNX18Q96RF0 628 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 OR2H1Q9GZK4 316 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 POLE4Q9NR33 117 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 VSX1Q9NZR4 365 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 ACTR3BQ9P1U1 418 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 GPR160Q9UJ42 338 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 TIMM10BQ9Y5J6 103 aa13.77□□□□□ -0.21
CCDC88C-209ENST00000554872 RTTNQ86VV8 2226 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 C12orf71A8MTZ7 269 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 A8MV72 311 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 GADD45GO95257 159 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 FABP3P05413 133 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 TACSTD2P09758 323 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 IGHV4-31P0DP07 118 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 ZNF23P17027 643 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 APEX1P27695 318 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 LAP3P28838 519 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 MAGEA2P43356 314 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 KLF3P57682 345 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 SELENOVP59797 346 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 PSG4Q00888 419 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 KRR1Q13601 381 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 ENDOGQ14249 297 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 SGCAQ16586 387 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 THSD4Q6ZMP0 1018 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 HIPK1Q86Z02 1210 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 ALDH16A1Q8IZ83 802 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 UBASH3BQ8TF42 649 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 FOXN4Q96NZ1 517 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 SYT3Q9BQG1 590 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 BPESC1Q9GZL8 116 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 SLCO1C1Q9NYB5 712 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 NKIRAS2Q9NYR9 191 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 ADAM21Q9UKJ8 722 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 AURKCQ9UQB9 309 aa13.76□□□□□ -0.21
CCDC88C-209ENST00000554872 UNC119BA6NIH7 251 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 IMPA2O14732 288 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 ARPC3O15145 178 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 KRT36O76013 467 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 DIRAS1O95057 198 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 CALB2P22676 271 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 IFNGR2P38484 337 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 RPS6KA3P51812 740 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 HMGA2P52926 109 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 MOGQ16653 247 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 PCGF3Q3KNV8 242 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 CYB5R2Q6BCY4 276 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 SMARCD3Q6STE5 483 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 ZER1Q7Z7L7 766 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 LRP11Q86VZ4 500 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 ZCCHC24Q8N2G6 241 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 SYNPRQ8TBG9 265 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 C11orf40Q8WZ69 217 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 HPS1Q92902 700 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 GPA33Q99795 319 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 WNT5BQ9H1J7 359 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 MYEF2Q9P2K5 600 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 ATPIF1Q9UII2 106 aa13.75□□□□□ -0.21
CCDC88C-209ENST00000554872 LOC100509620A0A075B734 347 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 IGHV4-61A0A0C4DH41 118 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 IGHV3-13P01766 116 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 FAM157BP0CG42 384 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 CCL2P13500 99 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 CTLA4P16410 223 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms