RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 DPY19L2P2Q6ZN68 376 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 FOXL2NBQ6ZUU3 175 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ADGRG5Q8IZF4 528 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 IL17RDQ8NFM7 739 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 FANK1Q8TC84 345 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ASB9Q96DX5 294 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ERMAPQ96PL5 475 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 GPX7Q96SL4 187 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 DOK1Q99704 481 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 VRK1Q99986 396 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 SYT3Q9BQG1 590 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF416Q9BWM5 594 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 SYT4Q9H2B2 425 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 OR52D1Q9H346 318 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 MUC13Q9H3R2 512 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 PLK3Q9H4B4 646 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 EGLN3Q9H6Z9 239 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF442Q9H7R0 627 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 TMCC3Q9ULS5 477 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 U3KQV3 271 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ABCA2Q9BZC7 2435 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 CR1P17927 2039 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 B9A039 149 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 XKRYO14609 159 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 SLC16A7O60669 478 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 GASTP01350 101 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 SNRPD2P62316 118 aaKnown RBP9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 HSF2Q03933 536 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 MAD2L1BPQ15013 274 aaPredicted RBP9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 EFNB3Q15768 340 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 RFX4Q33E94 735 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 SLC36A2Q495M3 483 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 NRN1LQ496H8 165 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 MTX3Q5HYI7 312 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 CLEC12AQ5QGZ9 265 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 SLC35F1Q5T1Q4 408 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 OR2T5Q6IEZ7 315 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF774Q6NX45 483 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 C1orf94Q6P1W5 598 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 CLEC9AQ6UXN8 241 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 OR8D4Q8NGM9 314 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 OR2T29Q8NH02 315 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 OR4K13Q8NH42 304 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 GNPDA2Q8TDQ7 276 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 CANT1Q8WVQ1 401 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 IFT27Q9BW83 186 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 CHID1Q9BWS9 393 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 REG4Q9BYZ8 158 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 PLA2G12AQ9BZM1 189 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 OR2H1Q9GZK4 316 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 NUAK2Q9H093 628 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 FN3KQ9H479 309 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 MAGIXQ9H6Y5 334 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 CDH20Q9HBT6 801 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 CCNB1IP1Q9NPC3 277 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 POLE4Q9NR33 117 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 COA3Q9Y2R0 106 aaPredicted RBP9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 PMF1-BGLAPU3KQ54 211 aa9.97□□□□□ -0.81
CCDC88C-208ENST00000554165 FAM171A2A8MVW0 826 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 KRT36O76013 467 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 CCNB2O95067 398 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 TXNDC12O95881 172 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 CLPTM1O96005 669 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 F12P00748 615 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 ADRA2AP08913 450 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 CST2P09228 141 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 HIST1H1CP16403 213 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 MSR1P21757 451 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 CCNOP22674 350 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 WNT5AP41221 380 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 ALDH3B1P43353 468 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 EFNA4P52798 201 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 KRTAP1-1Q07627 177 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 TRAP1Q12931 704 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 BNIP1Q12981 228 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 TSPAN31Q12999 210 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 MEP1BQ16820 701 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 ALKBH6Q3KRA9 238 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 FAM98BQ52LJ0 330 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 GPR139Q6DWJ6 353 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 ZNF620Q6ZNG0 422 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 TMEM179BQ7Z7N9 219 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 BIVMQ86UB2 503 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 AQP11Q8NBQ7 271 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 OR10H5Q8NGA6 315 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 MRPL24Q96A35 216 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 POM121L2Q96KW2 1035 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 LRGUKQ96M69 825 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 NMNAT3Q96T66 252 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 CADM1Q9BY67 442 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 TPK1Q9H3S4 243 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 BARX1Q9HBU1 254 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 KRCC1Q9NPI7 259 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 VSX1Q9NZR4 365 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 DUSP13Q9UII6 198 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 SAMHD1Q9Y3Z3 626 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 CMAHPQ9Y471 501 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 HIVEP2P31629 2446 aa9.96□□□□□ -0.82
CCDC88C-208ENST00000554165 JMJD1CQ15652 2540 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms