RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 CDKN2AP42771 156 aaKnown RBP16.58■□□□□ 0.24
PTCH1-227ENST00000553256 SNRPD2P62316 118 aaKnown RBP16.58■□□□□ 0.24
PTCH1-227ENST00000553256 PABPC1L2AQ5JQF8 200 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 GPR139Q6DWJ6 353 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 SMARCD3Q6STE5 483 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 UGT2A3Q6UWM9 527 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 CLEC9AQ6UXN8 241 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 DHFR2Q86XF0 187 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 SVOPLQ8N434 492 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 C10orf105Q8TEF2 133 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 MCUR1Q96AQ8 359 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 POLE4Q9NR33 117 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 GRHPRQ9UBQ7 328 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 ABCA1O95477 2261 aa16.58■□□□□ 0.24
PTCH1-227ENST00000553256 KRT36O76013 467 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 BMP4P12644 408 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 PCSK6P29122 969 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 NUDT6P53370 316 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 TSPAN31Q12999 210 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 KRR1Q13601 381 aaKnown RBP16.57■□□□□ 0.24
PTCH1-227ENST00000553256 TMEM53Q6P2H8 277 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 LRP11Q86VZ4 500 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 MAPK1IP1LQ8NDC0 245 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 POM121Q96HA1 1249 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 ZNF570Q96NI8 536 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 DDOQ99489 341 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 ZNF416Q9BWM5 594 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 OR2H1Q9GZK4 316 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 OR52D1Q9H346 318 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 C1orf198Q9H425 327 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 MYEF2Q9P2K5 600 aaKnown RBP16.57■□□□□ 0.24
PTCH1-227ENST00000553256 SLC7A8Q9UHI5 535 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 IER3IP1Q9Y5U9 82 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 HIVEP2P31629 2446 aa16.57■□□□□ 0.24
PTCH1-227ENST00000553256 IGLV3-9A0A075B6K5 115 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 FAM171A2A8MVW0 826 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 DCTN6O00399 190 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 APEX1P27695 318 aaKnown RBP16.56■□□□□ 0.24
PTCH1-227ENST00000553256 WNT5AP41221 380 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 DSCR9P59020 149 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 SGCAQ16586 387 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 TMEM255AQ5JRV8 349 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 ZNF362Q5T0B9 420 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-227ENST00000553256 ZNF620Q6ZNG0 422 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 Q71RC1 249 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-227ENST00000553256 SYT9Q86SS6 491 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 ADCK1Q86TW2 530 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 ADGRG5Q8IZF4 528 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 ZCCHC24Q8N2G6 241 aaKnown RBP16.56■□□□□ 0.24
PTCH1-227ENST00000553256 SYT4Q9H2B2 425 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 AURKCQ9UQB9 309 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 CMAHPQ9Y471 501 aa16.56■□□□□ 0.24
PTCH1-227ENST00000553256 SONP18583 2426 aaKnown RBP16.56■□□□□ 0.24
PTCH1-227ENST00000553256 IGLV1-36A0A0B4J1U3 117 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 OR10H3O60404 316 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 TP53P04637 393 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-227ENST00000553256 ZNF250P15622 560 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 MSR1P21757 451 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 TRAP1Q12931 704 aaKnown RBP16.55■□□□□ 0.24
PTCH1-227ENST00000553256 KCNMB1Q16558 191 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 ZNF101Q8IZC7 436 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 OR9Q2Q8NGE9 314 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 AKR7LQ8NHP1 331 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 SNX18Q96RF0 628 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 WACQ9BTA9 647 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 THTPAQ9BU02 230 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 NUAK2Q9H093 628 aa16.55■□□□□ 0.24
PTCH1-227ENST00000553256 KRCC1Q9NPI7 259 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-227ENST00000553256 FBXO9Q9UK97 447 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-227ENST00000553256 CHD3Q12873 2000 aaKnown RBP16.54■□□□□ 0.24
PTCH1-227ENST00000553256 PPP1R3DO95685 299 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 GASTP01350 101 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 GAAP10253 952 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 UCP2P55851 309 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 ERVS71-1P61550 626 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 LOXL1Q08397 574 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-227ENST00000553256 DBPQ10586 325 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-227ENST00000553256 FANK1Q8TC84 345 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 GNPDA2Q8TDQ7 276 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 SAMD8Q96LT4 415 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 PLA2G12AQ9BZM1 189 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 RNF121Q9H920 327 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 EMC7Q9NPA0 242 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 IL20Q9NYY1 176 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 SPEF1Q9Y4P9 236 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 TIMM10BQ9Y5J6 103 aa16.54■□□□□ 0.24
PTCH1-227ENST00000553256 AQP12BA6NM10 295 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 TNFRSF11BO00300 401 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 BHLHE40O14503 412 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 SOCS2O14508 198 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 XKRYO14609 159 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 MPZL1O95297 269 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 PTHP01270 115 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 STOMP27105 288 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 PPP1R8Q12972 351 aaKnown RBP16.53■□□□□ 0.24
PTCH1-227ENST00000553256 BNIP1Q12981 228 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 TBC1D28Q2M2D7 210 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 CLEC2AQ6UVW9 174 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 AQP12AQ8IXF9 295 aa16.53■□□□□ 0.24
PTCH1-227ENST00000553256 OR8D4Q8NGM9 314 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms