RNA–Protein interactions for RNA: ENST00000548786.1

DDX54-205, Transcript of DEAD-box helicase 54, human

TSL 2

Gene DDX54, Length 498 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX54-205	ENST00000548786	GYG2	O15488	501 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	MGRN1	O60291	552 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	STAMBP	O95630	424 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	CTLA4	P16410	223 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	FPR3	P25089	353 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	GUCA1A	P43080	201 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	CENPA	P49450	140 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	EFNA4	P52798	201 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	ERVS71-1	P61550	626 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	MAD2L1BP	Q15013	274 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	EFNB3	Q15768	340 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	TBC1D28	Q2M2D7	210 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	ALKBH6	Q3KRA9	238 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	NRN1L	Q496H8	165 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	PGBD2	Q6P3X8	592 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	UGT2A3	Q6UWM9	527 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	ASB9	Q96DX5	294 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	RHNO1	Q9BSD3	238 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	IFT27	Q9BW83	186 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	OR52D1	Q9H346	318 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	MUC13	Q9H3R2	512 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	TPK1	Q9H3S4	243 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	NRIP3	Q9NQ35	241 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	MYEF2	Q9P2K5	600 aa	Known RBP	13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	LYVE1	Q9Y5Y7	322 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	NSD1	Q96L73	2696 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	TMEM129	A0AVI4	362 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	VSTM5	A8MXK1	200 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	SLC16A7	O60669	478 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	GPANK1	O95872	356 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	LCK	P06239	509 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	ADRA2A	P08913	450 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	MSR1	P21757	451 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	APLNR	P35414	380 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	IFNGR2	P38484	337 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	ALDH3B1	P43353	468 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	MAGEA2	P43356	314 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	RPS6KA3	P51812	740 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	PSG4	Q00888	419 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	FAM98B	Q52LJ0	330 aa	Known RBP	13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	CLEC12A	Q5QGZ9	265 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	FAM27B	Q5VT28	67 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	DPY19L2P2	Q6ZN68	376 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	DPPA2	Q7Z7J5	298 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	FNDC8	Q8TC99	324 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	GNPDA2	Q8TDQ7	276 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	TSSK2	Q96PF2	358 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	GPX7	Q96SL4	187 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	BTBD10	Q9BSF8	475 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	ZNF416	Q9BWM5	594 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	OR2H1	Q9GZK4	316 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	C1orf21	Q9H246	121 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	EGLN3	Q9H6Z9	239 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	POLE4	Q9NR33	117 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	SLC7A8	Q9UHI5	535 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	DUSP13	Q9UII6	198 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	COA3	Q9Y2R0	106 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	FKBP7	Q9Y680	259 aa		13.59	□□□□□ -0.23
DDX54-205	ENST00000548786	CSPG4	Q6UVK1	2322 aa		13.58	□□□□□ -0.23
DDX54-205	ENST00000548786		A0A1W2PPW3	197 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	C5orf49	A4QMS7	147 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	KRT36	O76013	467 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	CCNB2	O95067	398 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	MPZL1	O95297	269 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	F12	P00748	615 aa	Predicted RBP	13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	HEXA	P06865	529 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	CST2	P09228	141 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	STOM	P27105	288 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	SLC6A6	P31641	620 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	CDKN2A	P42771	156 aa	Known RBP	13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	GSS	P48637	474 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	ENDOG	Q14249	297 aa	Known RBP	13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	RFX4	Q33E94	735 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	SPATA46	Q5T0L3	261 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	GPR139	Q6DWJ6	353 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	ZNF774	Q6NX45	483 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	LEG1	Q6P5S2	330 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	DNM1P46	Q6ZS02	220 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	JAZF1	Q86VZ6	243 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	OR4C15	Q8NGM1	316 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	OR4K13	Q8NH42	304 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	FAM168A	Q92567	244 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	MRPL24	Q96A35	216 aa	Known RBP	13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	DOK1	Q99704	481 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	TRIM15	Q9C019	465 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	WNT5B	Q9H1J7	359 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	FN3K	Q9H479	309 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	MAGIX	Q9H6Y5	334 aa		13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	SAMHD1	Q9Y3Z3	626 aa	Known RBP	13.58	□□□□□ -0.24
DDX54-205	ENST00000548786	LOC100509620	A0A075B734	347 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	ACOT8	O14734	319 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	CLPTM1	O96005	669 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	PTH	P01270	115 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	NOS3	P29474	1203 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	GLRX	P35754	106 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	PPOX	P50336	477 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	RIPPLY3	P57055	190 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	RPS23	P62266	143 aa	Known RBP	13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	GLO1	Q04760	184 aa		13.57	□□□□□ -0.24
DDX54-205	ENST00000548786	TSPAN31	Q12999	210 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms