RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PKP2Q99959 881 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 SLC30A2Q9BRI3 323 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 PAIP1Q9H074 479 aaKnown RBP14.26□□□□□ -0.13
VPS29-204ENST00000548259 CORO2BQ9UQ03 480 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 LRCH1Q9Y2L9 728 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 UBDO15205 165 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 TPST1O60507 370 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 MDH2P40926 338 aaKnown RBP14.25□□□□□ -0.13
VPS29-204ENST00000548259 DAP3P51398 398 aaKnown RBP14.25□□□□□ -0.13
VPS29-204ENST00000548259 RAG2P55895 527 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 MRPS34P82930 218 aaKnown RBP14.25□□□□□ -0.13
VPS29-204ENST00000548259 PAX8Q06710 450 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 TAF11Q15544 211 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 HIST3H3Q16695 136 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 OLFML2AQ68BL7 652 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 ZNF101Q8IZC7 436 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 ZNF283Q8N7M2 679 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 NOXO1Q8NFA2 376 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 PLEKHA8Q96JA3 519 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 POM121L2Q96KW2 1035 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 SAMD8Q96LT4 415 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 MAGEB18Q96M61 343 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 ZNF347Q96SE7 839 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 TMEM109Q9BVC6 243 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 MSL2Q9HCI7 577 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 KCNK9Q9NPC2 374 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 THAP1Q9NVV9 213 aa14.25□□□□□ -0.13
VPS29-204ENST00000548259 IFNL4K9M1U5 179 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 HOXA3O43365 443 aaPredicted RBP14.24□□□□□ -0.13
VPS29-204ENST00000548259 KITP10721 976 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 GSTM3P21266 225 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 WNT5AP41221 380 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 BPIFB3P59826 476 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 PCBD1P61457 104 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 SCARB2Q14108 478 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 PDCD1Q15116 288 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 COMTD1Q86VU5 262 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 KIR3DL3Q8N743 410 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 MPP4Q96JB8 637 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 SMURF2Q9HAU4 748 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 MAN2C1Q9NTJ4 1040 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 PDP1Q9P0J1 537 aaPredicted RBP14.24□□□□□ -0.13
VPS29-204ENST00000548259 PPP1R3CQ9UQK1 317 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 ANGPT4Q9Y264 503 aa14.24□□□□□ -0.13
VPS29-204ENST00000548259 FAM181BA6NEQ2 426 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 EVPLLA8MZ36 301 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 BLOC1S5-TXNDC5H3BN57 136 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 IGHV4-38-2P0DP08 117 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 ZNF32P17041 273 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 TUBG1P23258 451 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 CD80P33681 288 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 STX1BP61266 288 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 CDK5R2Q13319 367 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 SGCAQ16586 387 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 C10orf128Q5T292 105 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 SLC2A7Q6PXP3 512 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 LINC00114Q6XXX2 140 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 UPRTQ96BW1 309 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 ARHGDIGQ99819 225 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 SSBP3Q9BWW4 388 aaPredicted RBP14.23□□□□□ -0.13
VPS29-204ENST00000548259 TMEM38AQ9H6F2 299 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 NOX4Q9NPH5 578 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 TUBG2Q9NRH3 451 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 KIF17Q9P2E2 1029 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 KLHL21Q9UJP4 597 aa14.23□□□□□ -0.13
VPS29-204ENST00000548259 IGHV3OR16-10A0A075B7F0 116 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 TRAV40A0A0B4J280 105 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 SRRM5B3KS81 715 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 F5H0A9 414 aaPredicted RBP14.22□□□□□ -0.13
VPS29-204ENST00000548259 KPNA4O00629 521 aaPredicted RBP14.22□□□□□ -0.13
VPS29-204ENST00000548259 TPST2O60704 377 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 NDUFA7O95182 113 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 PLATP00750 562 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 RPS2P15880 293 aaKnown RBP14.22□□□□□ -0.13
VPS29-204ENST00000548259 ACADSP16219 412 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 AQP1P29972 269 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 SEC61A1P61619 476 aaKnown RBP14.22□□□□□ -0.13
VPS29-204ENST00000548259 GNB2P62879 340 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 ZMYND11Q15326 602 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 TTMPQ5BVD1 217 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 RFPL4BQ6ZWI9 263 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 NPEPL1Q8NDH3 523 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 OR2Z1Q8NG97 314 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 OR9I1Q8NGQ6 314 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 VANGL1Q8TAA9 524 aaPredicted RBP14.22□□□□□ -0.13
VPS29-204ENST00000548259 MAELQ96JY0 434 aaKnown RBP14.22□□□□□ -0.13
VPS29-204ENST00000548259 CITED1Q99966 193 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 MRPL13Q9BYD1 178 aaKnown RBP14.22□□□□□ -0.13
VPS29-204ENST00000548259 IL19Q9UHD0 177 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 TIMM10BQ9Y5J6 103 aa14.22□□□□□ -0.13
VPS29-204ENST00000548259 LOC100509620A0A075B734 347 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 CLPSL1A2RUU4 121 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 TRAPPC13A5PLN9 417 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 CPSF4LA6NMK7 179 aaKnown RBP14.21□□□□□ -0.13
VPS29-204ENST00000548259 ICMTO60725 284 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 TRMUO75648 421 aaKnown RBP14.21□□□□□ -0.13
VPS29-204ENST00000548259 NGFP01138 241 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 ASAH2BP0C7U1 165 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 ZNF133P52736 654 aaPredicted RBP14.21□□□□□ -0.13
VPS29-204ENST00000548259 RPL15P61313 204 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms