RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SIRT6Q8N6T7 355 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF565Q8N9K5 539 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 OR11H4Q8NGC9 324 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 FBXO17Q96EF6 278 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 OR1F2PQ96R84 312 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 KCNJ16Q9NPI9 418 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GMEB2Q9UKD1 530 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 FBXO4Q9UKT5 387 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 KCNE3Q9Y6H6 103 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 COL5A1P20908 1838 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SCN2AQ99250 2005 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM200CA6NKL6 621 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 A8MVJ9 347 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 STMND1H3BQB6 276 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 H7C1Q1 480 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 KAT7O95251 611 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 LATS1O95835 1130 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CHRM4P08173 479 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SBK2P0C263 348 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GAAP10253 952 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PIPP12273 146 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TPT1P13693 172 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PVRP15151 417 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ATF1P18846 271 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 HIST1H1TP22492 207 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 BDKRB2P30411 391 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 VIPR2P41587 438 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SNU13P55769 128 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 NDUFA6P56556 154 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 NRG3P56975 720 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 FXYD4P59646 89 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 RHEBQ15382 184 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 STEAP1BQ6NZ63 245 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 COX15Q7KZN9 410 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TRILQ7L0X0 811 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SSX9Q7RTT3 188 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PRR22Q8IZ63 422 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 C12orf76Q8N812 135 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 C17orf47Q8NEP4 570 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GPR32P1Q8NGA4 272 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GPR148Q8TDV2 347 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 MOAP1Q96BY2 351 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TBC1D20Q96BZ9 403 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 AMDHD1Q96NU7 426 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 WFDC6Q9BQY6 131 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CYSLTR2Q9NS75 346 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ASB6Q9NWX5 421 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SPTA1P02549 2419 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GGT3PA6NGU5 568 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 EFCAB7A8K855 629 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 C2CD4DB7Z1M9 353 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 FFAR1O14842 300 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM127O75204 238 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SEMA7AO75326 666 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 AIFM1O95831 613 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CD3DP04234 171 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ANKRD34CP0C6C1 535 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF888P0CJ79 500 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 RRASP10301 218 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 IL12BP29460 328 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CAV2P51636 162 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 FLI1Q01543 452 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ACY1Q03154 408 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 C1orf61Q13536 156 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CARD17Q5XLA6 110 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM65Q6PI78 240 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 FAM83HQ6ZRV2 1179 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 COMTD1Q86VU5 262 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM200AQ86VY9 491 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 WFDC3Q8IUB2 231 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF679Q8IYX0 411 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OR13C3Q8NGS6 347 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 FIBINQ8TAL6 211 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SETD7Q8WTS6 366 aaKnown RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 RASD2Q96D21 266 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 TAPBPLQ9BX59 468 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SLC38A1Q9H2H9 487 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 NRIP3Q9NQ35 241 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 TPSG1Q9NRR2 321 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ACSS1Q9NUB1 689 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 MED19A0JLT2 244 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 IDSB3KWA1 339 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SYT5O00445 386 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 PEX12O00623 359 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 LY86O95711 162 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 LDOC1O95751 146 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 LGI1O95970 557 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 IGF2P01344 180 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CPMP14384 443 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OMGP23515 440 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 S100PP25815 95 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 HSD11B1P28845 292 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SLC6A1P30531 599 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SLC6A12P48065 614 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 VAMP2P63027 116 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 B4GALNT1Q00973 533 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ROM1Q03395 351 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 MAPK14Q16539 360 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF628Q5EBL2 1059 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 NAA40Q86UY6 237 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms