RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 RAET1LQ5VY80 246 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 SFRP4Q6FHJ7 346 aaPredicted RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 TMEM225Q6GV28 225 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 ZNF544Q6NX49 715 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 SLC23A3Q6PIS1 610 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 OR51D1Q8NGF3 324 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 YIPF5Q969M3 257 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 NEK6Q9HC98 313 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 VSX1Q9NZR4 365 aaPredicted RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 CGGBP1Q9UFW8 167 aaPredicted RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 ZNF221Q9UK13 617 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 PPIEQ9UNP9 301 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 PCDHGA9Q9Y5G4 932 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 GPRIN2O60269 458 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 FAM157BP0CG42 384 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 BTCP35070 178 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 NTRK2Q16620 822 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 GFOD2Q3B7J2 385 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 OR10K2Q6IF99 312 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 MAMSTRQ6ZN01 415 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 TEX19Q8NA77 164 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 DACT3Q96B18 629 aaPredicted RBP9.9□□□□□ -0.82
CUX1-212ENST00000547394 MRPL48Q96GC5 212 aaKnown RBP9.9□□□□□ -0.82
CUX1-212ENST00000547394 UCN2Q96RP3 112 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 NDEL1Q9GZM8 345 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 COMMD4Q9H0A8 199 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 MRPS18BQ9Y676 258 aaKnown RBP9.9□□□□□ -0.82
CUX1-212ENST00000547394 MED13Q9UHV7 2174 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 NSG1A0A0A6YYJ2 146 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 DCDC2BA2VCK2 349 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 M0R296 226 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 AIPO00170 330 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 KDM4BO94953 1096 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 ZNF823P16415 610 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 DPP4P27487 766 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 MZT2BQ6NZ67 158 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.9□□□□□ -0.82
CUX1-212ENST00000547394 LRRTM1Q86UE6 522 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 MISPQ8IVT2 679 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 ZNF679Q8IYX0 411 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 SLC26A10Q8NG04 563 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 OR52I2Q8NH67 350 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 MFSD8Q8NHS3 518 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 TTC9Q92623 222 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 KCTD12Q96CX2 325 aaKnown RBP9.9□□□□□ -0.82
CUX1-212ENST00000547394 CYYR1Q96J86 154 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 ZC3H10Q96K80 434 aaKnown RBP9.9□□□□□ -0.82
CUX1-212ENST00000547394 IMMP1LQ96LU5 166 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 DCBLD2Q96PD2 775 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 SOX7Q9BT81 388 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 SLC26A1Q9H2B4 701 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 SPATA2Q9UM82 520 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 FLVCR2Q9UPI3 526 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 LOXL2Q9Y4K0 774 aa9.9□□□□□ -0.82
CUX1-212ENST00000547394 CACNA1GO43497 2377 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 P2RY10O00398 339 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 SEC14L5O43304 696 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 HLA-DQB1P01920 261 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 CDK2P24941 298 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 PRKXP51817 358 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 SPOCK1Q08629 439 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 Q0VFX4 171 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 BIVMQ86UB2 503 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 TOMM5Q8N4H5 51 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 GPR148Q8TDV2 347 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 C11orf40Q8WZ69 217 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 MS4A3Q96HJ5 214 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 KCNK17Q96T54 332 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 CMKLR1Q99788 373 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 TP63Q9H3D4 680 aaPredicted RBP9.89□□□□□ -0.83
CUX1-212ENST00000547394 ZMAT3Q9HA38 289 aaKnown RBP9.89□□□□□ -0.83
CUX1-212ENST00000547394 SDHAF3Q9NRP4 125 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 MCUBQ9NWR8 336 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 TAS2R4Q9NYW5 299 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 DNAJC13O75165 2243 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 PCNX2A6NKB5 2137 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 ZNF407Q9C0G0 2248 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 A0A1W2PNU3 283 aaPredicted RBP9.89□□□□□ -0.83
CUX1-212ENST00000547394 INMT-MINDY4F8WBC2 141 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 DKK1O94907 266 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 ITGA5P08648 1049 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 FOLR3P41439 243 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 MC2RQ01718 297 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 YRDCQ86U90 279 aaKnown RBP9.89□□□□□ -0.83
CUX1-212ENST00000547394 OR2Y1Q8NGV0 311 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 RPS4Y2Q8TD47 263 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 OIT3Q8WWZ8 545 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 SLC7A6Q92536 515 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 PROK2Q9HC23 129 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 RCE1Q9Y256 329 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 POLR1DQ9Y2S0 133 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 CACNG2Q9Y698 323 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 TMEM14AQ9Y6G1 99 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 DOCK10Q96BY6 2186 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 DCHS1Q96JQ0 3298 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 SULT2B1O00204 365 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 GMDSO60547 372 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 SP9P0CG40 484 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 GDNFP39905 211 aa9.89□□□□□ -0.83
CUX1-212ENST00000547394 DUSP3P51452 185 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms