RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SLC2A10O95528 541 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 SNAP29O95721 258 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 PTHP01270 115 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 MT-ND1P03886 318 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 CDAP32320 146 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 RAD52P43351 418 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 ZNF84P51523 738 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 ZNF133P52736 654 aaPredicted RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 KLF3P57682 345 aaPredicted RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 SELENOVP59797 346 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 MVKQ03426 396 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 PLP2Q04941 152 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 PIN1Q13526 163 aaPredicted RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 TBC1D28Q2M2D7 210 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 NRN1LQ496H8 165 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 RABL3Q5HYI8 236 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 PABPC1L2AQ5JQF8 200 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 ARMC4Q5T2S8 1044 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 FAHD2BQ6P2I3 314 aaPredicted RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 TMEM154Q6P9G4 183 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 SPATC1Q76KD6 591 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 CALHM3Q86XJ0 350 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 MEX3DQ86XN8 651 aaKnown RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 ICA1LQ8NDH6 482 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 RBM15BQ8NDT2 890 aaKnown RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 OR1J2Q8NGS2 313 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 OR1J1Q8NGS3 322 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 OR51F2Q8NH61 342 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 HDAC2Q92769 488 aaKnown RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 NMD3Q96D46 503 aaKnown RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 SGTBQ96EQ0 304 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 FAHD2AQ96GK7 314 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 MAGEB18Q96M61 343 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 BCL2L14Q9BZR8 327 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 MRPL18Q9H0U6 180 aaKnown RBP7.21□□□□□ -1.26
USP28-215ENST00000545608 C1orf198Q9H425 327 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 INIPQ9NRY2 104 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 SLCO1C1Q9NYB5 712 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 NKIRAS2Q9NYR9 191 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 GPR160Q9UJ42 338 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 RIMS3Q9UJD0 308 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 PCDHB10Q9UN67 800 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 GRIP1Q9Y3R0 1128 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 UGT2A1Q9Y4X1 527 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 CACNG2Q9Y698 323 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 SVEP1Q4LDE5 3571 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 hCG_2014768A0A024R1R8 64 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 LOC100509620A0A075B734 347 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 A0A0A6YYJ9 748 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 IGHV1-69-2A0A0G2JMI3 117 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 A0A0G2JND7 137 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 CENPBD1B2RD01 187 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 HMGB1P1B2RPK0 211 aaPredicted RBP7.2□□□□□ -1.26
USP28-215ENST00000545608 MCIDASD6RGH6 385 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 FXYD1O00168 92 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 MGRN1O60291 552 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 OR5F1O95221 314 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 IGHV3-13P01766 116 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 TSPAN19P0C672 248 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 ZNF32P17041 273 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 FUT4P22083 530 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 CCNOP22674 350 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 APLNRP35414 380 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 WNT5AP41221 380 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 RBM34P42696 430 aaKnown RBP7.2□□□□□ -1.26
USP28-215ENST00000545608 CRYBB2P43320 205 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 OR1E2P47887 323 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 DAP3P51398 398 aaKnown RBP7.2□□□□□ -1.26
USP28-215ENST00000545608 TAS2R41P59536 307 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 MRPS34P82930 218 aaKnown RBP7.2□□□□□ -1.26
USP28-215ENST00000545608 HSF2Q03933 536 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 GLO1Q04760 184 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 FMODQ06828 376 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 CYLC2Q14093 348 aaPredicted RBP7.2□□□□□ -1.26
USP28-215ENST00000545608 SGCAQ16586 387 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 TSTQ16762 297 aaKnown RBP7.2□□□□□ -1.26
USP28-215ENST00000545608 PCGF3Q3KNV8 242 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 TMEM255AQ5JRV8 349 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 THEM4Q5T1C6 240 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 C10orf128Q5T292 105 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 ACSM5Q6NUN0 579 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 FDX2Q6P4F2 183 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 SLC25A47Q6Q0C1 308 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 C12orf54Q6X4T0 127 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 USP51Q70EK9 711 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 ZNF101Q8IZC7 436 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 SEMA6DQ8NFY4 1073 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 AKR7LQ8NHP1 331 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 SNX33Q8WV41 574 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 TMEM239Q8WW34 195 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 RASSF5Q8WWW0 418 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 LIPHQ8WWY8 451 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 NSMAFQ92636 917 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 NABP1Q96AH0 204 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 LRRC58Q96CX6 371 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 POM121L2Q96KW2 1035 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 ZNF583Q96ND8 569 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 ECSITQ9BQ95 431 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 LRMDAQ9H2I8 198 aa7.2□□□□□ -1.26
USP28-215ENST00000545608 ZNF665Q9H7R5 613 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms