RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SLC25A44Q96H78 314 aaPredicted RBP13.54□□□□□ -0.24
USP28-214ENST00000545540 ABHD6Q9BV23 337 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 DIABLOQ9NR28 239 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 RLN2P04090 185 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 PSMD4P55036 377 aaKnown RBP13.54□□□□□ -0.24
USP28-214ENST00000545540 PLCXD2Q0VAA5 305 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 RBMS2Q15434 407 aaKnown RBP13.54□□□□□ -0.24
USP28-214ENST00000545540 RAB11BQ15907 218 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 HLA-DQA1Q5Y7H0 255 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 OR2AK2Q8NG84 335 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 LCORQ96JN0 433 aaPredicted RBP13.54□□□□□ -0.24
USP28-214ENST00000545540 PRODH2Q9UF12 536 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 DHDHQ9UQ10 334 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 OR2M5A3KFT3 312 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 SLC2A1P11166 492 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 CAPZBP47756 277 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 SLC17A1Q14916 467 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 NR0B2Q15466 257 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 RSPO4Q2I0M5 234 aaPredicted RBP13.53□□□□□ -0.24
USP28-214ENST00000545540 NHLRC3Q5JS37 347 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 KIAA0895LQ68EN5 471 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 STEAP1BQ6NZ63 245 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 RHOUQ7L0Q8 258 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 SLC36A1Q7Z2H8 476 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 SDR16C5Q8N3Y7 309 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 CHST4Q8NCG5 386 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 FAM71CQ8NEG0 241 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 TTC9Q92623 222 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 PDE7BQ9NP56 450 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 LANCL2Q9NS86 450 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 P2RY10O00398 339 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 SRPX2O60687 465 aaPredicted RBP13.53□□□□□ -0.24
USP28-214ENST00000545540 ZNF254O75437 659 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 NMBP08949 121 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 MAPK3P27361 379 aaPredicted RBP13.53□□□□□ -0.24
USP28-214ENST00000545540 S100A11P31949 105 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 FOXK1P85037 733 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP28-214ENST00000545540 MRPL38Q96DV4 380 aaKnown RBP13.53□□□□□ -0.24
USP28-214ENST00000545540 TCTN2Q96GX1 697 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 CUTCQ9NTM9 273 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 LRP12Q9Y561 859 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 HS3ST3A1Q9Y663 406 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 KCNMB2Q9Y691 235 aa13.53□□□□□ -0.24
USP28-214ENST00000545540 OR5K4A6NMS3 321 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 B8ZZF3 427 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 F5H5P2 479 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 ZNF354AO60765 605 aaPredicted RBP13.52□□□□□ -0.24
USP28-214ENST00000545540 IL33O95760 270 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 DRD1P21728 446 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 RORAP35398 523 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 NUDT1P36639 197 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 ARL4DP49703 201 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 HSD17B7P56937 341 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 GFOD2Q3B7J2 385 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 ANKRD16Q6P6B7 361 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 OR1J2Q8NGS2 313 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 CASTOR1Q8WTX7 329 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 PMM1Q92871 262 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 PLEKHA6Q9Y2H5 1048 aa13.52□□□□□ -0.24
USP28-214ENST00000545540 PRSS37A4D1T9 235 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 TMEM212A6NML5 194 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 PRAF2O60831 178 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 GNALP38405 381 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 AKR1C2P52895 323 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 SLC25A1P53007 311 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 AKR1C1Q04828 323 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 INPP5JQ15735 1006 aaPredicted RBP13.52□□□□□ -0.25
USP28-214ENST00000545540 ELFN2Q5R3F8 820 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 TMPRSS9Q7Z410 1059 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 OR6M1Q8NGM8 313 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 ASB12Q8WXK4 309 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 SLC25A28Q96A46 364 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 GPX7Q96SL4 187 aaPredicted RBP13.52□□□□□ -0.25
USP28-214ENST00000545540 PRR13Q9NZ81 148 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 CTSFQ9UBX1 484 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 MMP17Q9ULZ9 603 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 RAB3DO95716 219 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 GIPP09681 153 aaPredicted RBP13.52□□□□□ -0.25
USP28-214ENST00000545540 PPP3CBP16298 524 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 PPICP45877 212 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 IL10RAQ13651 578 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 TAF13Q15543 124 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 OLFML2AQ68BL7 652 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 TMEM225Q6GV28 225 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 TSSK4Q6SA08 328 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 ASB5Q8WWX0 329 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 MCHR2Q969V1 340 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 SOX7Q9BT81 388 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 TWSG1Q9GZX9 223 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 MFFQ9GZY8 342 aa13.52□□□□□ -0.25
USP28-214ENST00000545540 TRBV5-7A0A0A0MS05 114 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 TMED7-TICAM2A0A0A6YYA0 188 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 hCG_1807616A0A1W2PRN6 198 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 NAP1L6A6NFF2 107 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 C2CD4DB7Z1M9 353 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 ZNF749O43361 778 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 DDAH2O95865 285 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 LTBRP36941 435 aa13.51□□□□□ -0.25
USP28-214ENST00000545540 CAPZA2P47755 286 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms