RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ATPIF1Q9UII2 106 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 ZNF107Q9UII5 783 aaPredicted RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 NPIPA1Q9UND3 350 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 RPH3AQ9Y2J0 694 aaPredicted RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 WIF1Q9Y5W5 379 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 R4GMQ9 66 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 GON4LQ3T8J9 2241 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 CDH23Q9H251 3354 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 ANKRD20A5PA0PJZ0 165 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 LIPT2A6NK58 231 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 FAM171A2A8MVW0 826 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 C11orf98E9PRG8 122 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SLC17A2O00624 439 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 TP53I11O14683 189 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 KHNYNO15037 678 aaKnown RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 XRCC3O43542 346 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SLC16A7O60669 478 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 NOS1APO75052 506 aaPredicted RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 CER1O95813 267 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 TGM6O95932 706 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 IGHEP01854 428 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 H2AFB2P0C5Z0 115 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 CBX5P45973 191 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 PTH2RP49190 550 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 EIF3IQ13347 325 aaKnown RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 EXT1Q16394 746 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 MEP1BQ16820 701 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 WDR38Q5JTN6 314 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 C1QL3Q5VWW1 255 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 FAM166AQ6J272 317 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 TMEM65Q6PI78 240 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 ASB18Q6ZVZ8 466 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 TMPRSS9Q7Z410 1059 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 KRT77Q7Z794 578 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 NKAIN3Q8N8D7 197 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 FADS6Q8N9I5 356 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SLC26A10Q8NG04 563 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SYNPRQ8TBG9 265 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 LRRC20Q8TCA0 184 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 ELP5Q8TE02 316 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 EDAQ92838 391 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 MARC2Q969Z3 335 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 FOXRED1Q96CU9 486 aaPredicted RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 NTNG2Q96CW9 530 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 ZC3H10Q96K80 434 aaKnown RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 MED28Q9H204 178 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 MOB1AQ9H8S9 216 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SCPEP1Q9HB40 452 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 GLTPQ9NZD2 209 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 COQ3Q9NZJ6 369 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 PPP4R1LQ9P1A2 415 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 CDV3Q9UKY7 258 aaKnown RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 NTN3O00634 580 aaPredicted RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 GLSO94925 669 aaPredicted RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 RPP14O95059 124 aaKnown RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 PDGFAP04085 211 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 UBCP0CG48 685 aaKnown RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 CTLA4P16410 223 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 ZNF823P16415 610 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 IGFBP3P17936 291 aaPredicted RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 ADRA2CP18825 462 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 PTGDSP41222 190 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 FBXW4P57775 412 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 ADAM8P78325 824 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 HSF1Q00613 529 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 HLA-BQ31612 363 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 PLPPR5Q32ZL2 321 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 TMEM69Q5SWH9 247 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 HES5Q5TA89 166 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 TMEM244Q5VVB8 128 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 GLT8D1Q68CQ7 371 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 C3orf33Q6P1S2 294 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 ANKRD16Q6P6B7 361 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 FCRLAQ7L513 359 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 KRT74Q7RTS7 529 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 PRSS58Q8IYP2 241 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 ARMC10Q8N2F6 343 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 HSD17B8Q92506 261 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 TMEM106AQ96A25 262 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 ZBTB8AQ96BR9 441 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 CMKLR1Q99788 373 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 CRB3Q9BUF7 120 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 ABHD6Q9BV23 337 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 CKLFQ9UBR5 152 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 HDGFL3Q9Y3E1 203 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 A0A1B0GUH1 482 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 A0A1W2PPK0 400 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 CPED1A4D0V7 1026 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 H7C1C5 153 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 HLA-DQA2P01906 255 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 IL5P05113 134 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 DCNP07585 359 aaKnown RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 ATF4P18848 351 aaPredicted RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 LCN6P62502 163 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 TLE3Q04726 772 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 EIF2B1Q14232 305 aaKnown RBP8.85□□□□□ -0.99
SS18-205ENST00000542420 THEM4Q5T1C6 240 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 LAMTOR1Q6IAA8 161 aa8.85□□□□□ -0.99
SS18-205ENST00000542420 NHLRC1Q6VVB1 395 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms