RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 EDARQ9UNE0 448 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 H7C1C5 153 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 C19orf84I3L1E1 186 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 SLC16A6O15403 523 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 IGFBP1P08833 259 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 ZNF823P16415 610 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 HSPA13P48723 471 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 LCN6P62502 163 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 SCRN3Q0VDG4 424 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 IL18R1Q13478 541 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 AQP6Q13520 282 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 CRMP1Q14194 572 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 SGCAQ16586 387 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 MEDAGQ5VYS4 303 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 NXNL2Q5VZ03 156 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 UNQ6126/PRO20091Q6UXV3 157 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 LSRQ86X29 649 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 OR6V1Q8N148 313 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 SETD9Q8NE22 299 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 OR1J2Q8NGS2 313 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 OR52N5Q8NH56 324 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 LINC01560Q8TB33 94 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 TMEM163Q8TC26 289 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 Q96MT0 163 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 SLC29A1Q99808 456 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 KCNS3Q9BQ31 491 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 CDADC1Q9BWV3 514 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 RERGLQ9H628 205 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 RNF121Q9H920 327 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 CRNNQ9UBG3 495 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 COA3Q9Y2R0 106 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 UGT2A1Q9Y4X1 527 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 TIMM10BQ9Y5J6 103 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 GMPPBQ9Y5P6 360 aa15.32■□□□□ 0.04
CLSTN3-210ENST00000540931 POLQO75417 2590 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 ANKHD1Q8IWZ3 2542 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 A0A096LPE4 126 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 IGLV1-36A0A0B4J1U3 117 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 IQCMA0A1B0GVH7 501 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 A0A1W2PPZ6 126 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 SLC22A31A6NKX4 558 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 GLCEO94923 617 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 ATP6V1G2O95670 118 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 HLA-DQA2P01906 255 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 PEX2P28328 305 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 GGT2P36268 569 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 FOXG1P55316 489 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 HIKESHIQ53FT3 197 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 SLC25A30Q5SVS4 291 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 ANKRD34AQ69YU3 496 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 CXXC5Q7LFL8 322 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 C1orf174Q8IYL3 243 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 DHRSXQ8N5I4 330 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 IQCF1Q8N6M8 205 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 WDR31Q8NA23 367 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 ZNF837Q96EG3 531 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 MYCBPQ99417 103 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 TOR3AQ9H497 397 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 ATPIF1Q9UII2 106 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 NDRG4Q9ULP0 352 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 POLR1DQ9Y2S0 133 aa15.31■□□□□ 0.04
CLSTN3-210ENST00000540931 LOC100130705A0A1B0GUX0 176 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 H0YAE9 185 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 IGKV3-15P01624 115 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 CD79AP11912 226 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 SPI1P17947 270 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 RAB1AP62820 205 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 TSC22D1Q15714 1073 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 LRRC36Q1X8D7 754 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 LPCAT4Q643R3 524 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 SEZ6L2Q6UXD5 910 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 SHFQ7M4L6 423 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 WFDC8Q8IUA0 241 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 WDFY1Q8IWB7 410 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 GALNT4Q8N4A0 578 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 CYB561A3Q8NBI2 242 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 GJC3Q8NFK1 279 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 OR2AJ1Q8NGZ0 328 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 NABP1Q96AH0 204 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 PITX2Q99697 317 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 FAM118AQ9NWS6 357 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 B3GNT2Q9NY97 397 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 HSPE1-MOB4S4R3N1 261 aa15.3■□□□□ 0.04
CLSTN3-210ENST00000540931 OTOGQ6ZRI0 2925 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 A6NNC1 897 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 VSTM5A8MXK1 200 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 TLX2O43763 284 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 SNAP29O95721 258 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 CRYAAP02489 173 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 COX5BP10606 129 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 SNRPGP62308 76 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 EFNB1P98172 346 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 TEKQ02763 1124 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 POU4F2Q12837 409 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 ECH1Q13011 328 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 TEX30Q5JUR7 227 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 TMEM236Q5W0B7 351 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 FBXW10Q5XX13 1052 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 ARL9Q6T311 187 aa15.29■□□□□ 0.04
CLSTN3-210ENST00000540931 RHOUQ7L0Q8 258 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms