RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 MCUR1Q96AQ8 359 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 RASD2Q96D21 266 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 ZNF570Q96NI8 536 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 MAGIXQ9H6Y5 334 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 GRHPRQ9UBQ7 328 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 SPEF1Q9Y4P9 236 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 LYVE1Q9Y5Y7 322 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 HIVEP2P31629 2446 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 LOC100509620A0A075B734 347 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 VSTM5A8MXK1 200 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 IMPA2O14732 288 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 ACOT8O14734 319 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 KRT36O76013 467 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 PTHP01270 115 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 CSF3P09919 207 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 CCL2P13500 99 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 ZNF250P15622 560 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 APEX1P27695 318 aaKnown RBP12.2□□□□□ -0.46
USP28-209ENST00000540925 LAP3P28838 519 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 RPS23P62266 143 aaKnown RBP12.2□□□□□ -0.46
USP28-209ENST00000540925 PSG4Q00888 419 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 SGCAQ16586 387 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 RFX4Q33E94 735 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 PGBD2Q6P3X8 592 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 CLEC2AQ6UVW9 174 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 TRPM8Q7Z2W7 1104 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 ADCK1Q86TW2 530 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 LRP11Q86VZ4 500 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 DHFR2Q86XF0 187 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 ZCCHC24Q8N2G6 241 aaKnown RBP12.2□□□□□ -0.46
USP28-209ENST00000540925 ASB9Q96DX5 294 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 POM121L2Q96KW2 1035 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 RHNO1Q9BSD3 238 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 NDEL1Q9GZM8 345 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 WNT5BQ9H1J7 359 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 RNF121Q9H920 327 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 KRCC1Q9NPI7 259 aaPredicted RBP12.2□□□□□ -0.46
USP28-209ENST00000540925 POLE4Q9NR33 117 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 MYEF2Q9P2K5 600 aaKnown RBP12.2□□□□□ -0.46
USP28-209ENST00000540925 IL20RAQ9UHF4 553 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 AURKCQ9UQB9 309 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 CHD3Q12873 2000 aaKnown RBP12.2□□□□□ -0.46
USP28-209ENST00000540925 ABCA1O95477 2261 aa12.2□□□□□ -0.46
USP28-209ENST00000540925 IGLV3-9A0A075B6K5 115 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 XKRYO14609 159 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 ARPC3O15145 178 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 SYNGR3O43761 229 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 SLC25A16P16260 332 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 MSR1P21757 451 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 WNT5AP41221 380 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 CDKN2AP42771 156 aaKnown RBP12.19□□□□□ -0.46
USP28-209ENST00000540925 GALK2Q01415 458 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 LOXL1Q08397 574 aaPredicted RBP12.19□□□□□ -0.46
USP28-209ENST00000540925 TSPAN31Q12999 210 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 TBC1D28Q2M2D7 210 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 UGT2A3Q6UWM9 527 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 SYT9Q86SS6 491 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 BCAS4Q8TDM0 211 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 FAM168AQ92567 244 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 CLPTM1LQ96KA5 538 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 BTBD10Q9BSF8 475 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 WACQ9BTA9 647 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 ZNF416Q9BWM5 594 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 TRIM15Q9C019 465 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 OR2H1Q9GZK4 316 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 OR52D1Q9H346 318 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 MYOZ1Q9NP98 299 aaPredicted RBP12.19□□□□□ -0.46
USP28-209ENST00000540925 IER3IP1Q9Y5U9 82 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 FKBP7Q9Y680 259 aa12.19□□□□□ -0.46
USP28-209ENST00000540925 YLPM1P49750 1951 aaKnown RBP12.19□□□□□ -0.46
USP28-209ENST00000540925 CUBNO60494 3623 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 IQCMA0A1B0GVH7 501 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 NDUFS8O00217 210 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 OR10H3O60404 316 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 UBOX5O94941 541 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 ADRA2AP08913 450 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 STOMP27105 288 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 UCP2P55851 309 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 PLP2Q04941 152 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 KCNMB1Q16558 191 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 PGM2L1Q6PCE3 622 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 ZNF620Q6ZNG0 422 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 OR1J2Q8NGS2 313 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 AKR7LQ8NHP1 331 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 FANK1Q8TC84 345 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 POP5Q969H6 163 aaKnown RBP12.18□□□□□ -0.46
USP28-209ENST00000540925 SLC7A6OSQ96CW6 309 aaPredicted RBP12.18□□□□□ -0.46
USP28-209ENST00000540925 SNX18Q96RF0 628 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 VRK1Q99986 396 aaPredicted RBP12.18□□□□□ -0.46
USP28-209ENST00000540925 RAB1BQ9H0U4 201 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 SYT4Q9H2B2 425 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 KCNN2Q9H2S1 579 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 CCNB1IP1Q9NPC3 277 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 VNN3Q9NY84 501 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 TIMM10BQ9Y5J6 103 aa12.18□□□□□ -0.46
USP28-209ENST00000540925 IGLV1-36A0A0B4J1U3 117 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 A0A1W2PPL8 197 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 LOC390937A0A1W2PQ73 354 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 DCTN6O00399 190 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 SOCS2O14508 198 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms