RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TREML1Q86YW5 311 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 SYT14Q8NB59 555 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 VANGL1Q8TAA9 524 aaPredicted RBP11.49□□□□□ -0.57
SS18-204ENST00000539244 KLF14Q8TD94 323 aaPredicted RBP11.49□□□□□ -0.57
SS18-204ENST00000539244 LIPHQ8WWY8 451 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 POP5Q969H6 163 aaKnown RBP11.49□□□□□ -0.57
SS18-204ENST00000539244 TAMM41Q96BW9 452 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 LRRC58Q96CX6 371 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 DIRC2Q96SL1 478 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 CGREF1Q99674 301 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 EGLN1Q9GZT9 426 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 KAT8Q9H7Z6 458 aaKnown RBP11.49□□□□□ -0.57
SS18-204ENST00000539244 ZMAT3Q9HA38 289 aaKnown RBP11.49□□□□□ -0.57
SS18-204ENST00000539244 TMBIM4Q9HC24 238 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 CCNB1IP1Q9NPC3 277 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 LEF1Q9UJU2 399 aaPredicted RBP11.49□□□□□ -0.57
SS18-204ENST00000539244 ZDHHC8Q9ULC8 765 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 PCDHGB1Q9Y5G3 927 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 SPRY3O43610 288 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 OR7A10O76100 309 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 SLC2A10O95528 541 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 NR2C1P13056 603 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 CCNOP22674 350 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 PRTN3P24158 256 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 ZFP36P26651 326 aaKnown RBP11.48□□□□□ -0.57
SS18-204ENST00000539244 RBM34P42696 430 aaKnown RBP11.48□□□□□ -0.57
SS18-204ENST00000539244 CRYBA2P53672 197 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 MTPNP58546 118 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 LCN2P80188 198 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 FAM27BQ5VT28 67 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 RFPL4BQ6ZWI9 263 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 DOK3Q7L591 496 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 DHDDSQ86SQ9 333 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 DEFB108BQ8NET1 73 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 SLC25A40Q8TBP6 338 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 ST7LQ8TDW4 575 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 RASSF5Q8WWW0 418 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 STON2Q8WXE9 905 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 C22orf15Q8WYQ4 148 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 OR2J1Q9GZK6 312 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 RABEP2Q9H5N1 569 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 NANOGQ9H9S0 305 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 INIPQ9NRY2 104 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 EIF3KQ9UBQ5 218 aaKnown RBP11.48□□□□□ -0.57
SS18-204ENST00000539244 PPIAL4AQ9Y536 164 aa11.48□□□□□ -0.57
SS18-204ENST00000539244 IGKV1D-43A0A0B4J1Z2 117 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 ISPDA4D126 451 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 C5orf49A4QMS7 147 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 GMNCA6NCL1 334 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 IGHV2-70P01814 119 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 FUT1P19526 365 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 CDAP32320 146 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 AQP2P41181 271 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 GDI2P50395 445 aaKnown RBP11.47□□□□□ -0.57
SS18-204ENST00000539244 PSG4Q00888 419 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 ZMAT1Q5H9K5 638 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 SPATA46Q5T0L3 261 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 INTS11Q5TA45 600 aaKnown RBP11.47□□□□□ -0.57
SS18-204ENST00000539244 SLC25A47Q6Q0C1 308 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 CCDC80Q76M96 950 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 AKR7LQ8NHP1 331 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 PFN4Q8NHR9 129 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 TSPEARQ8WU66 669 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 HDAC2Q92769 488 aaKnown RBP11.47□□□□□ -0.57
SS18-204ENST00000539244 POLR2J2Q9GZM3 115 aaKnown RBP11.47□□□□□ -0.57
SS18-204ENST00000539244 POLR2J3Q9H1A7 115 aaKnown RBP11.47□□□□□ -0.57
SS18-204ENST00000539244 PURGQ9UJV8 347 aaKnown RBP11.47□□□□□ -0.57
SS18-204ENST00000539244 NDUFAF1Q9Y375 327 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 NPTNQ9Y639 398 aa11.47□□□□□ -0.57
SS18-204ENST00000539244 A8MXK9 166 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 IGHMP01871 453 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 GZMMP51124 257 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 PPP1CBP62140 327 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 FMODQ06828 376 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 TAF11Q15544 211 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 TMEM155Q4W5P6 130 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 SPRNQ5BIV9 151 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 RBMS3Q6XE24 437 aaKnown RBP11.46□□□□□ -0.57
SS18-204ENST00000539244 FOXL2NBQ6ZUU3 175 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 NKAIN4Q8IVV8 208 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 SIGLECL1Q8N7X8 197 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 MOSPD2Q8NHP6 518 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 ABHD4Q8TB40 342 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 LRRC8CQ8TDW0 803 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 SLC26A7Q8TE54 656 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 TMEM255BQ8WV15 326 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 GEMIN6Q8WXD5 167 aaKnown RBP11.46□□□□□ -0.57
SS18-204ENST00000539244 SGTBQ96EQ0 304 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 C1orf147Q96MC9 270 aaPredicted RBP11.46□□□□□ -0.57
SS18-204ENST00000539244 GPA33Q99795 319 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 ALG12Q9BV10 488 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 OR2H1Q9GZK4 316 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 WNT5BQ9H1J7 359 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 TXNIPQ9H3M7 391 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 MMP26Q9NRE1 261 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 C20orf141Q9NUB4 165 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 PLEK2Q9NYT0 353 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 UBAP1Q9NZ09 502 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 NUP50Q9UKX7 468 aa11.46□□□□□ -0.57
SS18-204ENST00000539244 DNAJC9-AS1A6NH13 148 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms