RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 NTHL1P78549 312 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 DCDP81605 110 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 SORDQ00796 357 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 NAAAQ02083 359 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 TNFRSF17Q02223 184 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 SRSF4Q08170 494 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 PDZK1IP1Q13113 114 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CBFBQ13951 182 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CDK5R1Q15078 307 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CDSNQ15517 529 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 PCGF3Q3KNV8 242 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 ZNF528Q3MIS6 628 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 LINC00303Q3SY05 128 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 Q3ZCU0 254 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 SLC35D3Q5M8T2 416 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 FAM46CQ5VWP2 391 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 H3F3CQ6NXT2 135 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 C5orf46Q6UWT4 87 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 UNQ9370/PRO34162Q6UXP9 181 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 PRSS45Q7RTY3 260 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 SLC36A1Q7Z2H8 476 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 OR2W3Q7Z3T1 314 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 PARGQ86W56 976 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 NR2C2APQ86WQ0 139 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 NRMQ8IXM6 262 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 SLC35F3Q8IY50 421 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 C12orf76Q8N812 135 aaPredicted RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 TMEM99Q8N816 258 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 RNF152Q8N8N0 203 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 WDSUB1Q8N9V3 476 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 Q8NA96 180 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 OR4D11Q8NGI4 311 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 OR14A16Q8NHC5 309 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 RNASE11Q8TAA1 199 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 SYNPRQ8TBG9 265 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 PRUNE2Q8WUY3 3088 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 ING5Q8WYH8 240 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 ELSPBP1Q96BH3 223 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 SAT2Q96F10 170 aaPredicted RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 ZDHHC12Q96GR4 267 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 LRIG1Q96JA1 1093 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 GUCD1Q96NT3 240 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CNN2Q99439 309 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 TBX5Q99593 518 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CDX2Q99626 313 aaPredicted RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 CRB3Q9BUF7 120 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 C1QTNF6Q9BXI9 259 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 OR52D1Q9H346 318 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CDCP1Q9H5V8 836 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 XKR8Q9H6D3 395 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 APMAPQ9HDC9 416 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 TREM1Q9NP99 234 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 MEPEQ9NQ76 525 aaPredicted RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 CA10Q9NS85 328 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 TM7SF3Q9NS93 570 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 MTFP1Q9UDX5 166 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 FLVCR2Q9UPI3 526 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 FOXJ3Q9UPW0 622 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 MRPS17Q9Y2R5 130 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 MED31Q9Y3C7 131 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 ZNF780BQ9Y6R6 833 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 KIAA1549LQ6ZVL6 1849 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 MYO7AQ13402 2215 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 OR6C74A6NCV1 312 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 OR5H14A6NHG9 310 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 OR2AG2A6NM03 316 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 HSPB2A8KAH6 182 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 F5H0A9 414 aaPredicted RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 BLOC1S5-TXNDC5H3BN57 136 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 UBE2CO00762 179 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 NDUFS4O43181 175 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 CDC40O60508 579 aaKnown RBP eCLIP5.94□□□□□ -1.46
USP28-202ENST00000535607 SRPX2O60687 465 aaPredicted RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 EIF1BO60739 113 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 CTNSO60931 367 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GLSO94925 669 aaPredicted RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 MT-ND4LP03901 98 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PET100P0DJ07 73 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 LAMP2P13473 410 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GTF2F2P13984 249 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ABOP16442 354 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GJA1P17302 382 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 CSNK2A2P19784 350 aaPredicted RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 CD34P28906 385 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PRSS3P35030 304 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 AHRP35869 848 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 DLSTP36957 453 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PMELP40967 661 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 EIF1P41567 113 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 SSR2P43308 183 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 TSFMP43897 325 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 GPR4P46093 362 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PRKXP51817 358 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 TAS2R20P59543 309 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ST8SIA6P61647 398 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PPIAP62937 165 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 UBE2IP63279 158 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 ECH1Q13011 328 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 AIMP2Q13155 320 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 INSL4Q14641 139 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms