RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NRROSQ86YC3 692 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 CBLN2Q8IUK8 224 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 C20orf196Q8IYI0 205 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 HS3ST5Q8IZT8 346 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 BATF2Q8N1L9 274 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 HIST3H2BBQ8N257 126 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 ZNF664Q8N3J9 261 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 SDR9C7Q8NEX9 313 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 OR4K5Q8NGD3 323 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 OR1J2Q8NGS2 313 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 OR56B4Q8NH76 319 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 SMAP2Q8WU79 429 aaPredicted RBP4.96□□□□□ -1.62
CD44-236ENST00000533222 C15orf40Q8WUR7 153 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 ARL11Q969Q4 196 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 ANKRD9Q96BM1 317 aaPredicted RBP4.96□□□□□ -1.62
CD44-236ENST00000533222 UPRTQ96BW1 309 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 KTI12Q96EK9 354 aaPredicted RBP4.96□□□□□ -1.62
CD44-236ENST00000533222 GALNT14Q96FL9 552 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 LMLNQ96KR4 655 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 JSRP1Q96MG2 331 aaPredicted RBP4.96□□□□□ -1.62
CD44-236ENST00000533222 OR2M4Q96R27 311 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 CLCC1Q96S66 551 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 CHRDL1Q9BU40 450 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 PCDHAC1Q9H158 963 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 ABHD16BQ9H3Z7 469 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 RIOX1Q9H6W3 641 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 CXorf36Q9H7Y0 433 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 ANKRA2Q9H9E1 313 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 AKIRIN1Q9H9L7 192 aaPredicted RBP4.96□□□□□ -1.62
CD44-236ENST00000533222 SAYSD1Q9NPB0 183 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 SLC17A5Q9NRA2 495 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 IL17BQ9UHF5 180 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 SERTAD3Q9UJW9 196 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 ORC6Q9Y5N6 252 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.96□□□□□ -1.62
CD44-236ENST00000533222 PAPPAQ13219 1627 aa4.96□□□□□ -1.62
CD44-236ENST00000533222 TOGARAM1Q9Y4F4 1720 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 CICQ96RK0 1608 aaPredicted RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 A0A087WZ62 844 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 A0A0D9SFI3 127 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 LOC100130705A0A1B0GUX0 176 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 RNF222A6NCQ9 220 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 NKX2-6A6NCS4 301 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 MBD3L4A6NDZ8 208 aaPredicted RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 MBD3L3A6NE82 208 aaPredicted RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 ARL5CA6NH57 179 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 OR5H14A6NHG9 310 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 ANKRD63C9JTQ0 380 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 ZNF670-ZNF695F2Z2N8 137 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 G3V3Q6 166 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 GPR31O00270 319 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 CXCR6O00574 342 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 EPHB6O15197 1021 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 ZNF749O43361 778 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 MOSPD3O75425 235 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 IFNA5P01569 189 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 UMODP07911 640 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 MMP2P08253 660 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 CST2P09228 141 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 TMEM225BP0DP42 221 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 FGF3P11487 239 aaPredicted RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 TDGF1P13385 188 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 GSTM3P21266 225 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 TNFSF4P23510 183 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 F2RP25116 425 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 PSMB9P28065 219 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 IL2RGP31785 369 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 PLA2G5P39877 138 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 FASLGP48023 281 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 TTPAP49638 278 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 GEMP55040 296 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 SNU13P55769 128 aaKnown RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 SEC61A1P61619 476 aaKnown RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 RPS15P62841 145 aaKnown RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 NAAAQ02083 359 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 TNFAIP1Q13829 316 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 HERPUD1Q15011 391 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 EBPQ15125 230 aaKnown RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 TSNQ15631 228 aaKnown RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 NDUFA9Q16795 377 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 SLC35G1Q2M3R5 365 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 HYAL4Q2M3T9 481 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 TMEM176BQ3YBM2 270 aaPredicted RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 ZNF628Q5EBL2 1059 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 SPIN3Q5JUX0 258 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 PHYHD1Q5SRE7 291 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 PRAMEF17Q5VTA0 474 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 SAMD13Q5VXD3 122 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 ZNF660Q6AZW8 331 aaPredicted RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 TMEM225Q6GV28 225 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 OR52W1Q6IF63 320 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 LAIR2Q6ISS4 152 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 STEAP1BQ6NZ63 245 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 WDR88Q6ZMY6 472 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 MBOAT2Q6ZWT7 520 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 WDR53Q7Z5U6 358 aaPredicted RBP4.95□□□□□ -1.62
CD44-236ENST00000533222 DEFB128Q7Z7B8 93 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 RIMKLAQ8IXN7 391 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 LYG1Q8N1E2 194 aa4.95□□□□□ -1.62
CD44-236ENST00000533222 PI4KAP1Q8N8J0 262 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms