RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HDAC2Q92769 488 aaKnown RBP9.65□□□□□ -0.86
VPS28-214ENST00000531032 LRRC58Q96CX6 371 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 MARS2Q96GW9 593 aaKnown RBP9.65□□□□□ -0.86
VPS28-214ENST00000531032 TMPRSS13Q9BYE2 586 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 KCNN2Q9H2S1 579 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 CCNB1IP1Q9NPC3 277 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 SAR1AQ9NR31 198 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 DECR2Q9NUI1 292 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 RIMS3Q9UJD0 308 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 PCDHB10Q9UN67 800 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 CACNG2Q9Y698 323 aa9.65□□□□□ -0.86
VPS28-214ENST00000531032 TANC2Q9HCD6 1990 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 LOC100509620A0A075B734 347 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 LOC100653049A0A140TA62 436 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 C5orf49A4QMS7 147 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 GMNCA6NCL1 334 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 J3QLI3 93 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 TPD52L2O43399 206 aaKnown RBP9.64□□□□□ -0.87
VPS28-214ENST00000531032 ICMTO60725 284 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 SHOX2O60902 331 aaPredicted RBP9.64□□□□□ -0.87
VPS28-214ENST00000531032 KRT34O76011 436 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 IFNA14P01570 189 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 IGHV1-46P01743 117 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 ADH4P08319 380 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 NR2C1P13056 603 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 CCNOP22674 350 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 MPV17P39210 176 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 ACTG1P63261 375 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 PSG4Q00888 419 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 FMODQ06828 376 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 TAF11Q15544 211 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 TSTQ16762 297 aaKnown RBP9.64□□□□□ -0.87
VPS28-214ENST00000531032 ZNF718Q3SXZ3 478 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 LRRC23Q53EV4 343 aaPredicted RBP9.64□□□□□ -0.87
VPS28-214ENST00000531032 FAM27BQ5VT28 67 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 CGB2Q6NT52 195 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 ERICH5Q6P6B1 374 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 SLC25A47Q6Q0C1 308 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 UNQ6126/PRO20091Q6UXV3 157 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 C1QL2Q7Z5L3 287 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 C1orf174Q8IYL3 243 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 IPCEF1Q8WWN9 437 aaPredicted RBP9.64□□□□□ -0.87
VPS28-214ENST00000531032 RAB1CQ92928 201 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 ELMOD3Q96FG2 381 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 TIMD4Q96H15 378 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 PLA2G12AQ9BZM1 189 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 TXNIPQ9H3M7 391 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 CCDC134Q9H6E4 229 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 EIF3KQ9UBQ5 218 aaKnown RBP9.64□□□□□ -0.87
VPS28-214ENST00000531032 HIF3AQ9Y2N7 669 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 MED31Q9Y3C7 131 aa9.64□□□□□ -0.87
VPS28-214ENST00000531032 DYSFO75923 2080 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 TMEM89A2RUT3 159 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 ZSCAN5BA6NJL1 495 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 H3BSA7 217 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 TRIM77I1YAP6 450 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 SPRY3O43610 288 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 RGS9O75916 674 aaPredicted RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 UBOX5O94941 541 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 NPPAP01160 153 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 IGHMP01871 453 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 MAKP20794 623 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 GATA3P23771 443 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 GCH1P30793 250 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 LIPAP38571 399 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 MDH1P40925 334 aaKnown RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 OR1E2P47887 323 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 GDI2P50395 445 aaKnown RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 ERVK-25P63136 954 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 CD47Q08722 323 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 LAPTM4AQ15012 233 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 SGCAQ16586 387 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 ALG10Q5BKT4 473 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 SPATA46Q5T0L3 261 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 THEM4Q5T1C6 240 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 DCAF12L2Q5VW00 463 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 FOXL2NBQ6ZUU3 175 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 RFPL4BQ6ZWI9 263 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 ARPINQ7Z6K5 226 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 PEG10Q86TG7 708 aaKnown RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 AKR7LQ8NHP1 331 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 SLC25A40Q8TBP6 338 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 FNDC8Q8TC99 324 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 KLF14Q8TD94 323 aaPredicted RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 NSMAFQ92636 917 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 RCN3Q96D15 328 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 JMJD8Q96S16 334 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 ALG12Q9BV10 488 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 RBM4Q9BWF3 364 aaKnown RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 OR2H1Q9GZK4 316 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 OR2J1Q9GZK6 312 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 NSRP1Q9H0G5 558 aaKnown RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 WNT5BQ9H1J7 359 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 CYSLTR2Q9NS75 346 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 ARMCX1Q9P291 453 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 CGGBP1Q9UFW8 167 aaPredicted RBP9.63□□□□□ -0.87
VPS28-214ENST00000531032 WNK2Q9Y3S1 2297 aa9.63□□□□□ -0.87
VPS28-214ENST00000531032 PLSCR5A0PG75 271 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 HTR3EA5X5Y0 456 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 FAM220BPB1ANY3 271 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms