RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 RPL3LQ92901 407 aaKnown RBP18.8■□□□□ 0.6
VPS28-212ENST00000530836 TMEM54Q969K7 222 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 MCHR2Q969V1 340 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 ZNF385AQ96PM9 386 aaKnown RBP18.8■□□□□ 0.6
VPS28-212ENST00000530836 SLX1AQ9BQ83 275 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 OR51E2Q9H255 320 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 MRPL22Q9NWU5 206 aaKnown RBP18.8■□□□□ 0.6
VPS28-212ENST00000530836 GLTPQ9NZD2 209 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 KCNG2Q9UJ96 466 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 FLVCR1Q9Y5Y0 555 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 IGKV3D-15A0A087WSY6 115 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 A0A1W2PPW3 197 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 PLPP2O43688 288 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 LALBAP00709 142 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 GAAP10253 952 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 PCSK6P29122 969 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 VBP1P61758 197 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 SRYQ05066 204 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 AQP6Q13520 282 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 PCK2Q16822 640 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 ZNF684Q5T5D7 378 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 USP43Q70EL4 1123 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 WDFY1Q8IWB7 410 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 OR6N1Q8NGY5 312 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 ROBO4Q8WZ75 1007 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 CHCHD6Q9BRQ6 235 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 TTYH2Q9BSA4 534 aa18.79■□□□□ 0.6
VPS28-212ENST00000530836 LOC100506127A0A0U1RQW1 187 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 METTL15A6NJ78 407 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 WISP2O76076 250 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 ZNF432O94892 652 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 HLA-DPB1P04440 258 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 KRT8P05787 483 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 CD1AP06126 327 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 QDPRP09417 244 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 CRYBB2P43320 205 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 LSM3P62310 102 aaKnown RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 SPCS2Q15005 226 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 CARD17Q5XLA6 110 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 KCTD18Q6PI47 426 aaPredicted RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 OR10H5Q8NGA6 315 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 RNF128Q8TEB7 428 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 TMEM45BQ96B21 275 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 ZNF845Q96IR2 970 aaPredicted RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 RNF122Q9H9V4 155 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 EMC3Q9P0I2 261 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 GNG8Q9UK08 70 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 SF3B6Q9Y3B4 125 aaKnown RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 LIPGQ9Y5X9 500 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 KIAA1549Q9HCM3 1950 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 A0A1B0GVC2 190 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 SLC43A1O75387 559 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 GUCA1AP43080 201 aaPredicted RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 TGM4P49221 684 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 TDGF1P3P51864 188 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 NCS1P62166 190 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 SIRPAP78324 504 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 RNPS1Q15287 305 aaKnown RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 TP53I3Q53FA7 332 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 C10orf128Q5T292 105 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 RPL22L1Q6P5R6 122 aaKnown RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 CD200R1LQ6Q8B3 271 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 RFLNBQ8N5W9 214 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 THEM6Q8WUY1 208 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 NSMAFQ92636 917 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 PELI1Q96FA3 418 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 DCUN1D5Q9BTE7 237 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 SIAEQ9HAT2 523 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 FOXD3Q9UJU5 478 aaPredicted RBP18.78■□□□□ 0.6
VPS28-212ENST00000530836 ALPK2Q86TB3 2170 aa18.78■□□□□ 0.6
VPS28-212ENST00000530836 IGKV1D-43A0A0B4J1Z2 117 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 GPANK1O95872 356 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 SPARCP09486 303 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 KRTCAP3Q53RY4 240 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 C20orf196Q8IYI0 205 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 WDYHV1Q96HA8 205 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 GPR137Q96N19 417 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 CDADC1Q9BWV3 514 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 PRRG4Q9BZD6 226 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 PARPBPQ9NWS1 579 aa18.77■□□□□ 0.6
VPS28-212ENST00000530836 TRDV1A0A1B0GX56 115 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 AQP7O14520 342 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 OGG1O15527 345 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 GPX5O75715 221 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 EDN3P14138 238 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 FGF9P31371 208 aaPredicted RBP18.76■□□□□ 0.59
VPS28-212ENST00000530836 ROM1Q03395 351 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 KCNMB1Q16558 191 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 LRFN4Q6PJG9 635 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 AAED1Q7RTV5 226 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 MS4A15Q8N5U1 240 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 CENPOQ9BU64 300 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 EXOSC4Q9NPD3 245 aaKnown RBP18.76■□□□□ 0.59
VPS28-212ENST00000530836 B3GAT2Q9NPZ5 323 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 GSTK1Q9Y2Q3 226 aa18.76■□□□□ 0.59
VPS28-212ENST00000530836 OR6C65A6NJZ3 312 aa18.75■□□□□ 0.59
VPS28-212ENST00000530836 ZNF724A8MTY0 619 aa18.75■□□□□ 0.59
VPS28-212ENST00000530836 ZNF182P17025 639 aaPredicted RBP18.75■□□□□ 0.59
VPS28-212ENST00000530836 IGFBP7Q16270 282 aa18.75■□□□□ 0.59
VPS28-212ENST00000530836 DMKNQ6E0U4 476 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms