RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ST7LQ8TDW4 575 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 KCNE4Q8WWG9 221 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 KIAA1143Q96AT1 154 aaPredicted RBP18.44■□□□□ 0.54
VPS28-209ENST00000528142 SIGLEC12Q96PQ1 595 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 B3GAT2Q9NPZ5 323 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 TRABD2BA6NFA1 517 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 ACOD1A6NK06 481 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 TMEM212A6NML5 194 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 CEACAM1P13688 526 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 SRMP19623 302 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 PSMD7P51665 324 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 CCR9P51686 369 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 RASGEF1BQ0VAM2 473 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 POU4F3Q15319 338 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 Q499Y3 187 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 WDR38Q5JTN6 314 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 CNIH2Q6PI25 160 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 SLC25A47Q6Q0C1 308 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 KRT77Q7Z794 578 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 C11orf40Q8WZ69 217 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 FER1L6-AS2Q96M78 137 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 UTP23Q9BRU9 249 aaKnown RBP18.43■□□□□ 0.54
VPS28-209ENST00000528142 OR2B2Q9GZK3 357 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 TBCCD1Q9NVR7 557 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 C14orf119Q9NWQ9 140 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 DLL3Q9NYJ7 618 aa18.43■□□□□ 0.54
VPS28-209ENST00000528142 PTPRZ1P23471 2315 aaPredicted RBP18.43■□□□□ 0.54
VPS28-209ENST00000528142 NOTOA8MTQ0 251 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 TNFSF11O14788 317 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 VAMP5O95183 116 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 SLC34A2O95436 690 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 PNPP00491 289 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 LAP3P28838 519 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 CASRP41180 1078 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 NOVA1P51513 510 aaKnown RBP18.42■□□□□ 0.54
VPS28-209ENST00000528142 TGIF1Q15583 401 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 BAK1Q16611 211 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 METAP1DQ6UB28 335 aaPredicted RBP18.42■□□□□ 0.54
VPS28-209ENST00000528142 SPATC1Q76KD6 591 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 DCXRQ7Z4W1 244 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 ORAI1Q96D31 301 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 UCN2Q96RP3 112 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 NAA11Q9BSU3 229 aaPredicted RBP18.42■□□□□ 0.54
VPS28-209ENST00000528142 PPP1R3EQ9H7J1 279 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 ABI3Q9P2A4 366 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 ZNF726A6NNF4 738 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 H0YC42 278 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 DNPH1O43598 174 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 SLC19A2O60779 497 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 ZNF432O94892 652 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 SLC2A2P11168 524 aaPredicted RBP18.42■□□□□ 0.54
VPS28-209ENST00000528142 RBMS1P29558 406 aaKnown RBP18.42■□□□□ 0.54
VPS28-209ENST00000528142 CLDN20P56880 219 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 MFAP5Q13361 173 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 CARD17Q5XLA6 110 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 CREB3L2Q70SY1 520 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 GGNQ86UU5 652 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 LINC00346Q8IVM7 164 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 GDPD1Q8N9F7 314 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 POC5Q8NA72 575 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 MCHR2Q969V1 340 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 FAM173AQ9BQD7 235 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 SRXN1Q9BYN0 137 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 COMMD4Q9H0A8 199 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 TIGARQ9NQ88 270 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 LRP12Q9Y561 859 aa18.42■□□□□ 0.54
VPS28-209ENST00000528142 IGHV3-15A0A0B4J1V0 119 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 ZNF254O75437 659 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 SRSF10O75494 262 aaKnown RBP18.41■□□□□ 0.54
VPS28-209ENST00000528142 WDPCPO95876 746 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 EPXP11678 715 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 AZGP1P25311 298 aaKnown RBP18.41■□□□□ 0.54
VPS28-209ENST00000528142 RIDAP52758 137 aaKnown RBP18.41■□□□□ 0.54
VPS28-209ENST00000528142 CLDN17P56750 224 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 WIPI1Q5MNZ9 446 aaPredicted RBP18.41■□□□□ 0.54
VPS28-209ENST00000528142 OR7E24Q6IFN5 339 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 LRFN4Q6PJG9 635 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 RDH10Q8IZV5 341 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 OR8H2Q8N162 312 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 ZNF676Q8N7Q3 588 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 OR2M7Q8NG81 312 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 ABTB1Q969K4 478 aaPredicted RBP18.41■□□□□ 0.54
VPS28-209ENST00000528142 GFI1Q99684 422 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 ASCL3Q9NQ33 180 aa18.41■□□□□ 0.54
VPS28-209ENST00000528142 BOKQ9UMX3 212 aaPredicted RBP18.41■□□□□ 0.54
VPS28-209ENST00000528142 ATF1P18846 271 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 ELK1P19419 428 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 APEX1P27695 318 aaKnown RBP18.4■□□□□ 0.54
VPS28-209ENST00000528142 RAC3P60763 192 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 MFGE8Q08431 387 aaPredicted RBP18.4■□□□□ 0.54
VPS28-209ENST00000528142 OR1C1Q15619 314 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 DEGS2Q6QHC5 323 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 ASB18Q6ZVZ8 466 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 CLEC1AQ8NC01 280 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 IL17RDQ8NFM7 739 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 OR10AC1Q8NH08 325 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 SFXN2Q96NB2 322 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 SP140LQ9H930 580 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 CYB5R1Q9UHQ9 305 aa18.4■□□□□ 0.54
VPS28-209ENST00000528142 ADAM30Q9UKF2 790 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 376.3 ms