RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 DDX28Q9NUL7 540 aaKnown RBP19.95■□□□□ 0.78
CPSF1-202ENST00000527827 UBAP1Q9NZ09 502 aa19.95■□□□□ 0.78
CPSF1-202ENST00000527827 PLSCR5A0PG75 271 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 ISPDA4D126 451 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 C5orf49A4QMS7 147 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 TMPRSS2O15393 492 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 TSPAN19P0C672 248 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 HKR1P10072 659 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 DAP3P51398 398 aaKnown RBP19.94■□□□□ 0.78
CPSF1-202ENST00000527827 PSG4Q00888 419 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 FMODQ06828 376 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 RFPL4BQ6ZWI9 263 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 HDDC2Q7Z4H3 204 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 NKAIN4Q8IVV8 208 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 SLC30A8Q8IWU4 369 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 MOSPD2Q8NHP6 518 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 HDAC2Q92769 488 aaKnown RBP19.94■□□□□ 0.78
CPSF1-202ENST00000527827 NANOGQ9H9S0 305 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 EIF3KQ9UBQ5 218 aaKnown RBP19.94■□□□□ 0.78
CPSF1-202ENST00000527827 KLHL21Q9UJP4 597 aa19.94■□□□□ 0.78
CPSF1-202ENST00000527827 PPIAL4EA0A075B759 164 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 PPIAL4CA0A0B4J2A2 164 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 PPIAL4DF5H284 164 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 PPIAL4FP0DN26 164 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 SLC3A1Q07837 685 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 SIGLECL1Q8N7X8 197 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 DEFB108BQ8NET1 73 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 LRRC8CQ8TDW0 803 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 SLC26A7Q8TE54 656 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 TMEM255BQ8WV15 326 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 GEMIN6Q8WXD5 167 aaKnown RBP19.93■□□□□ 0.78
CPSF1-202ENST00000527827 LRRC58Q96CX6 371 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 EGLN1Q9GZT9 426 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 SMURF2Q9HAU4 748 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 C20orf141Q9NUB4 165 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 DCAF16Q9NXF7 216 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 NDUFAF1Q9Y375 327 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 TRRAPQ9Y4A5 3859 aa19.93■□□□□ 0.78
CPSF1-202ENST00000527827 NGFP01138 241 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 RBMXP38159 391 aaKnown RBP19.92■□□□□ 0.78
CPSF1-202ENST00000527827 GDI2P50395 445 aaKnown RBP19.92■□□□□ 0.78
CPSF1-202ENST00000527827 ERVK-25P63136 954 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 FOXL1Q12952 345 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 SGCAQ16586 387 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 SLC25A47Q6Q0C1 308 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 TREML1Q86YW5 311 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 ST7LQ8TDW4 575 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 LIPHQ8WWY8 451 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 NSMAFQ92636 917 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 SGTBQ96EQ0 304 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 WNT5BQ9H1J7 359 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 RABEP2Q9H5N1 569 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 ZNF696Q9H7X3 374 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 MMP26Q9NRE1 261 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 CYSLTR2Q9NS75 346 aa19.92■□□□□ 0.78
CPSF1-202ENST00000527827 ICMTO60725 284 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 FOXH1O75593 365 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 IGF2P01344 180 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 IGHV2-70P01814 119 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 CD55P08174 381 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 LIPAP38571 399 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 RBM34P42696 430 aaKnown RBP19.91■□□□□ 0.78
CPSF1-202ENST00000527827 GZMMP51124 257 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 PPP1CBP62140 327 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 FAM27BQ5VT28 67 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 SHISA2Q6UWI4 295 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 UNQ6126/PRO20091Q6UXV3 157 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 DOK3Q7L591 496 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 OR10A6Q8NH74 314 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 ABHD4Q8TB40 342 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 C1QTNF5Q9BXJ0 243 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 OR2H1Q9GZK4 316 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 MSL2Q9HCI7 577 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 NPHS2Q9NP85 383 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 STX18Q9P2W9 335 aaKnown RBP19.91■□□□□ 0.78
CPSF1-202ENST00000527827 CGGBP1Q9UFW8 167 aaPredicted RBP19.91■□□□□ 0.78
CPSF1-202ENST00000527827 ZDHHC8Q9ULC8 765 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 NPTNQ9Y639 398 aa19.91■□□□□ 0.78
CPSF1-202ENST00000527827 NPIPB13A6NJU9 1138 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 NPIPB4C9JG80 1138 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 TNFRSF1BP20333 461 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 LAPTM4AQ15012 233 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 INTS11Q5TA45 600 aaKnown RBP19.9■□□□□ 0.78
CPSF1-202ENST00000527827 CCDC80Q76M96 950 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 C1orf174Q8IYL3 243 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 POP5Q969H6 163 aaKnown RBP19.9■□□□□ 0.78
CPSF1-202ENST00000527827 C1orf147Q96MC9 270 aaPredicted RBP19.9■□□□□ 0.78
CPSF1-202ENST00000527827 ZNF69Q9UC07 566 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 PURGQ9UJV8 347 aaKnown RBP19.9■□□□□ 0.78
CPSF1-202ENST00000527827 SH3GLB1Q9Y371 365 aa19.9■□□□□ 0.78
CPSF1-202ENST00000527827 TRAPPC2LH3BP13 241 aa19.89■□□□□ 0.77
CPSF1-202ENST00000527827 H3BSA7 217 aa19.89■□□□□ 0.77
CPSF1-202ENST00000527827 ANGPT2O15123 496 aa19.89■□□□□ 0.77
CPSF1-202ENST00000527827 PRTN3P24158 256 aa19.89■□□□□ 0.77
CPSF1-202ENST00000527827 CD47Q08722 323 aa19.89■□□□□ 0.77
CPSF1-202ENST00000527827 NFYCQ13952 458 aa19.89■□□□□ 0.77
CPSF1-202ENST00000527827 VMACQ2NL98 169 aa19.89■□□□□ 0.77
CPSF1-202ENST00000527827 KLF17Q5JT82 389 aaPredicted RBP19.89■□□□□ 0.77
CPSF1-202ENST00000527827 RBMS3Q6XE24 437 aaKnown RBP19.89■□□□□ 0.77
CPSF1-202ENST00000527827 TMEM239Q8WW34 195 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms