RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ZNF84P51523 738 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 LSM3P62310 102 aaKnown RBP18.6■□□□□ 0.57
VPS28-208ENST00000527797 GPR50Q13585 617 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 KCNMB1Q16558 191 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 P4HA3Q7Z4N8 544 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 RPL3LQ92901 407 aaKnown RBP18.6■□□□□ 0.57
VPS28-208ENST00000527797 PELI1Q96FA3 418 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 GPR137Q96N19 417 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 RBM24Q9BX46 236 aaKnown RBP18.6■□□□□ 0.57
VPS28-208ENST00000527797 IKZF2Q9UKS7 526 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 UGT2A1Q9Y4X1 527 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 KIAA1549Q9HCM3 1950 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 CELSR3Q9NYQ7 3312 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 ALPK2Q86TB3 2170 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 PSMD9O00233 223 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 TGM6O95932 706 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 KRTCAP3Q53RY4 240 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 KCTD18Q6PI47 426 aaPredicted RBP18.59■□□□□ 0.57
VPS28-208ENST00000527797 ADGRE4PQ86SQ3 457 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 YIPF7Q8N8F6 280 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 CHCHD6Q9BRQ6 235 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 ABHD6Q9BV23 337 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 GP6Q9HCN6 339 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 POLE4Q9NR33 117 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 ACOXLQ9NUZ1 547 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 MRM2Q9UI43 246 aaKnown RBP18.59■□□□□ 0.57
VPS28-208ENST00000527797 CLEC4AQ9UMR7 237 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 STUB1Q9UNE7 303 aa18.59■□□□□ 0.57
VPS28-208ENST00000527797 SLC22A1O15245 554 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 OR8G3PP0DMU2 310 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 SIRPAP78324 504 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 CCDC58Q4VC31 144 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 FOXL2NBQ6ZUU3 175 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 HAVCR2Q8TDQ0 301 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 OR8B4Q96RC9 309 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 TRIB1Q96RU8 372 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 AMELYQ99218 206 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 EMC7Q9NPA0 242 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 CLCF1Q9UBD9 225 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 POLR1DQ9Y2S0 133 aa18.58■□□□□ 0.56
VPS28-208ENST00000527797 SF3B6Q9Y3B4 125 aaKnown RBP18.58■□□□□ 0.56
VPS28-208ENST00000527797 SIRT4Q9Y6E7 314 aaPredicted RBP18.58■□□□□ 0.56
VPS28-208ENST00000527797 LOC100506127A0A0U1RQW1 187 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 MED19A0JLT2 244 aaPredicted RBP18.57■□□□□ 0.56
VPS28-208ENST00000527797 TRIM64BA6NI03 449 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 OR6C65A6NJZ3 312 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 AHRRA9YTQ3 701 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 KRT33AO76009 404 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 GABRA5P31644 462 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 VBP1P61758 197 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 RPS25P62851 125 aaKnown RBP18.57■□□□□ 0.56
VPS28-208ENST00000527797 MRPL28Q13084 256 aaKnown RBP18.57■□□□□ 0.56
VPS28-208ENST00000527797 AQP6Q13520 282 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 SGCAQ16586 387 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 RIPPLY2Q5TAB7 128 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 GDPGP1Q6ZNW5 385 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 DCXRQ7Z4W1 244 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 LINC00346Q8IVM7 164 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 ALDH16A1Q8IZ83 802 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 OR5M9Q8NGP3 310 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 OR2AJ1Q8NGZ0 328 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 OR52N5Q8NH56 324 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 CPT1CQ8TCG5 803 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 TMEM203Q969S6 136 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 MROQ9BYG7 248 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 LINC00470Q9BZP3 86 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 SLCO5A1Q9H2Y9 848 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 CRLF2Q9HC73 371 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 GLRX2Q9NS18 164 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 SLCO1C1Q9NYB5 712 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 PTTG2Q9NZH5 202 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 GRIP1Q9Y3R0 1128 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 ASPMQ8IZT6 3477 aa18.57■□□□□ 0.56
VPS28-208ENST00000527797 HSPB2A8KAH6 182 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 OGG1O15527 345 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 ZNHIT1O43257 154 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 PLPP2O43688 288 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 GPX5O75715 221 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 MSR1P21757 451 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 ROM1Q03395 351 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 HSPB2Q16082 182 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 RPL22L1Q6P5R6 122 aaKnown RBP18.56■□□□□ 0.56
VPS28-208ENST00000527797 ARL9Q6T311 187 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 RPTNQ6XPR3 784 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 KRT77Q7Z794 578 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 ZNF679Q8IYX0 411 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 NELFAQ9H3P2 528 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 EXOSC4Q9NPD3 245 aaKnown RBP18.56■□□□□ 0.56
VPS28-208ENST00000527797 CYB5R1Q9UHQ9 305 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 SSR3Q9UNL2 185 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 ZNF407Q9C0G0 2248 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 TMEM8BA6NDV4 472 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 ABHD16AO95870 558 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 CD53P19397 219 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 EDNRAP25101 427 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 PSMB10P40306 273 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 CRYBB2P43320 205 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 NCS1P62166 190 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 LSM6P62312 80 aaKnown RBP18.56■□□□□ 0.56
VPS28-208ENST00000527797 MRPS34P82930 218 aaKnown RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms