RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 THRAP10827 490 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSKH1P11801 424 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDH1P12830 882 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF35P13682 527 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 HLA-DOBP13765 273 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSD17B1P14061 328 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 LIFP15018 202 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 UCHL3P15374 230 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF250P15622 560 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 HIST1H1CP16403 213 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF26P17031 533 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF7P17097 686 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ITGA2P17301 1181 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SDC1P18827 310 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CELP19835 753 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TNFRSF1BP20333 461 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB4AP20338 218 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB5AP20339 215 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRPS1L1P21108 318 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZP3P21754 424 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 IDSP22304 550 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC2A5P22732 501 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CFL1P23528 166 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 DTYMKP23919 212 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CMA1P23946 247 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGFBP5P24593 272 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCNE1P24864 410 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CXCR2P25025 360 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 AK4P27144 223 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 HLA-DMAP28067 261 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSMB5P28074 263 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NTSP30990 170 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CEACAM8P31997 349 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 GTF2H1P32780 548 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPA3P35244 121 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARL2P36404 184 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CEACAM3P40198 252 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RFC3P40938 356 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ID1P41134 155 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PTGDSP41222 190 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SOX3P41225 446 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NBL1P41271 181 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 BTDP43251 543 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAGEA3P43357 314 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RANBP1P43487 201 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CAPZBP47756 277 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 OMPP47874 163 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RFX5P48382 616 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SERPINB9P50453 376 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSRP3P50461 194 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDK9P50750 372 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 IDH3GP51553 393 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CAV2P51636 162 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSMD7P51665 324 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPM6AP51674 278 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRKXP51817 358 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRELPP51888 382 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 FUT6P51993 359 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 EFNA3P52797 238 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 XGP55808 180 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 DLX5P56178 289 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 AP1S2P56377 157 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PEX3P56589 373 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIPK4P57078 832 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NUP107P57740 925 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 VSX2P58304 361 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF121P58317 390 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 BRWD1-AS2P59051 145 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTBP60709 375 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB4BP61018 213 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBE2MP61081 183 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBE2KP61086 200 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERVS71-1P61550 626 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RHOAP61586 193 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS14P62263 151 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNRPD1P62314 119 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 BTG1P62324 171 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTA2P62736 377 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL31P62899 125 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL8P62917 257 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS27AP62979 156 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTG1P63261 375 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTG2P63267 376 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTC1P68032 377 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTA1P68133 377 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCL7P80098 99 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 S100A12P80511 92 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPS11P82912 194 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 VLDLRP98155 873 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 HMGCS1Q01581 520 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL18AQ02543 176 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF85Q03923 595 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF33BQ06732 778 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CKAP4Q07065 602 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYP24A1Q07973 514 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MGAT3Q09327 533 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC10A7Q0GE19 358 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 C2orf80Q0P641 193 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ST3GAL4Q11206 333 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMARCB1Q12824 385 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms