RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CBLCQ9ULV8 474 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 DIP2BQ9P265 1576 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 TRAV36DV7A0A075B6V5 113 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 TERTO14746 1132 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 GPM6AP51674 278 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 SCAND1P57086 179 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 DOC2BQ14184 412 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 NNATQ16517 81 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 PNLIPRP3Q17RR3 467 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 SLC36A2Q495M3 483 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 OR4A47Q6IF82 309 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 FAM180BQ6P0A1 224 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 MMP21Q8N119 569 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 OR4A4PQ8NGN8 299 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 LRRC3BQ96PB8 259 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 COL25A1Q9BXS0 654 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 CA14Q9ULX7 337 aa10.35□□□□□ -0.75
LIMCH1-217ENST00000512946 TRAV27A0A087WT01 109 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 TRBV4-1A0A0J9YWV2 114 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 RNGTTO60942 597 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 GPR75O95800 540 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ELAVL4P26378 380 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 PPOXP50336 477 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ADPRHP54922 357 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 EMC4Q5J8M3 183 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 OR8G2PQ6IF36 304 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 GDF6Q6KF10 455 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 OR10J5Q8NHC4 309 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 BOCQ9BWV1 1114 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 AMBRA1Q9C0C7 1298 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 GPR34Q9UPC5 381 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 DEPDC5O75140 1603 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 RRP8O43159 456 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 EIF1BO60739 113 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 CLDN12P56749 244 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 SLC35A1P78382 337 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 B3GNTL1Q67FW5 361 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF761Q86XN6 746 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ARHGEF39Q8N4T4 335 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 IL22RA1Q8N6P7 574 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ZDHHC22Q8N966 263 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 L3MBTL4Q8NA19 623 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 SLC38A9Q8NBW4 561 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 FBXW5Q969U6 566 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 SORBS1Q9BX66 1292 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 HEMK1Q9Y5R4 338 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ADGRB2O60241 1585 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 GYPBP06028 91 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 JMJD7P0C870 316 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 SRP9P49458 86 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 DLK1P80370 383 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 PLXDC2Q6UX71 529 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 DND1Q8IYX4 353 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 FIBINQ8TAL6 211 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ANAPC16Q96DE5 110 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 WDFY2Q96P53 400 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ATF6BQ99941 703 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 SLC17A5Q9NRA2 495 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 TREX1Q9NSU2 369 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 MIOXQ9UGB7 285 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 BMPR1BO00238 502 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF264O43296 627 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 CLEC2LP0C7M8 214 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 HIST1H1TP22492 207 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 GJA4P35212 333 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 BMPR1AP36894 532 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ELFN2Q5R3F8 820 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 FCRL6Q6DN72 434 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 GLIPR1L1Q6UWM5 242 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 PNPLA1Q8N8W4 532 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 EXD3Q8N9H8 876 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 TMEM229BQ8NBD8 167 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 GPR87Q9BY21 358 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 PITPNC1Q9UKF7 332 aa10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF256Q9Y2P7 627 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-217ENST00000512946 MEIKINA0A087WXM9 373 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 POM121BA6NF01 834 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 LEFTY2O00292 366 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 TUSC2O75896 110 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 ICAM2P13598 275 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC6A1P30531 599 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 YIPF6Q96EC8 236 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 NEURL3Q96EH8 262 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 NGBQ9NPG2 151 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 INSL5Q9Y5Q6 135 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 TRAV1-2A0A0B4J238 106 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 HELTA6NFD8 242 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 SOD1P00441 154 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 G6PCP35575 357 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 FOXO1Q12778 655 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 PMS2P11Q13670 270 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 RTL8BQ17RB0 113 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 TXNDC8Q6A555 127 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 GLDNQ6ZMI3 551 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 NECAP1Q8NC96 275 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 OR10G3Q8NGC4 313 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 PEX11GQ96HA9 241 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 A0A0D9SEW6 157 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 KDM4EB2RXH2 506 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 AQP7O14520 342 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms