RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PRSS3P35030 304 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 MAPK8P45983 427 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CDX1P47902 265 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 RPL29P47914 159 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 GATMP50440 423 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 RIPPLY1Q0D2K3 151 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM189A2Q15884 450 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC25A30Q5SVS4 291 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 BTNL3Q6UXE8 466 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 LANCL3Q6ZV70 420 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 TMEFF1Q8IYR6 380 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 DND1Q8IYX4 353 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 PRSS35Q8N3Z0 413 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 PAQR4Q8N4S7 273 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CSNK1A1LQ8N752 337 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 OR52L1Q8NGH7 329 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 OR5M8Q8NGP6 311 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 SP7Q8TDD2 431 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CPNE4Q96A23 557 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CD180Q99467 661 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 SNHG12Q9BXW3 62 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CYTL1Q9NRR1 136 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 LPAR3Q9UBY5 353 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 MSRAQ9UJ68 235 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 ACAD8Q9UKU7 415 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CBY1Q9Y3M2 126 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 IER3IP1Q9Y5U9 82 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 FANCMQ8IYD8 2048 aa6.59□□□□□ -1.36
LIMCH1-207ENST00000508466 RALGAPA2Q2PPJ7 1873 aa6.59□□□□□ -1.36
LIMCH1-207ENST00000508466 KIAA2026Q5HYC2 2103 aa6.59□□□□□ -1.36
LIMCH1-207ENST00000508466 MED12Q93074 2177 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ELOA3DA6NLF2 546 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 H7C417 338 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 PPP1R2P9O14990 202 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 NPC1O15118 1278 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 RRP8O43159 456 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BKO60814 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 OR2F2O95006 317 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 PAPLNO95428 1278 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BJP06899 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 SPARCP09486 303 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 AKAIN1P0CW23 69 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 PGA4P0DJD7 388 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 PGA5P0DJD9 388 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 MMP9P14780 707 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 DPEP1P16444 411 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 LAG3P18627 525 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BOP23527 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BBP33778 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 MAP3K8P41279 467 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 DHPSP49366 369 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 UCP3P55916 312 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BDP58876 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BCP62807 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 OR2F1Q13607 317 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ZNHIT3Q15649 155 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ZNF239Q16600 458 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST2H2BEQ16778 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ELOA3BQ3SY89 546 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 MIDNQ504T8 468 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 XKR4Q5GH76 650 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 FKBP1CQ5VVH2 108 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HACD4Q5VWC8 232 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 VITQ6UXI7 678 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ERASQ7Z444 233 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 RANBP3LQ86VV4 465 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ELOA3Q8NG57 546 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 OR6N1Q8NGY5 312 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 MFSD8Q8NHS3 518 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 NUDCD2Q8WVJ2 157 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BHQ93079 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 DCBLD2Q96PD2 775 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BNQ99877 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HIST1H2BMQ99879 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ADAM2Q99965 735 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 RNF126Q9BV68 326 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 SRMSQ9H3Y6 488 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 B4GALT6Q9UBX8 382 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 MTFP1Q9UDX5 166 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 TAC3Q9UHF0 121 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 RAB22AQ9UL26 194 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 SELENOKQ9Y6D0 94 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 BTAF1O14981 1849 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 DOCK9Q9BZ29 2069 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 CASP8AP2Q9UKL3 1982 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 URB1O60287 2271 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 NAP1L6A6NFF2 107 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 PEX12O00623 359 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 LILRB5O75023 590 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 TSPAN15O95858 294 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 IFNA17P01571 189 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 PRH1P02810 166 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 RGS19P49795 217 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 RAP1AP62834 184 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 C2orf76Q3KRA6 126 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 ZNF550Q7Z398 422 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 HSD11B1LQ7Z5J1 315 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 GKN2Q86XP6 184 aa6.58□□□□□ -1.36
LIMCH1-207ENST00000508466 POC1BQ8TC44 478 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms