RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CDKN2BP42772 138 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SYKP43405 635 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 CX3CR1P49238 355 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 PRRX1P54821 245 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SLC25A11Q02978 314 aaKnown RBP2.55□□□□□ -2
HMGB1P28-201ENST00000507778 KCTD19Q17RG1 926 aaPredicted RBP2.55□□□□□ -2
HMGB1P28-201ENST00000507778 DEFB116Q30KQ4 102 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SPANXN2Q5MJ10 180 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SPECC1LQ69YQ0 1117 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 C22orf42Q6IC83 251 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 OR52W1Q6IF63 320 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SAXO1Q8IYX7 474 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 IQCKQ8N0W5 287 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 PRELID2Q8N945 189 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 STARD8Q92502 1023 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 CREB3L1Q96BA8 519 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 NOX3Q9HBY0 568 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SLC40A1Q9NP59 571 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 GPATCH2LQ9NWQ4 482 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 HRASLS2Q9NWW9 162 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 OR12D3Q9UGF7 316 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 LGALS13Q9UHV8 139 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 VANGL2Q9ULK5 521 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 MN1Q10571 1320 aaPredicted RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 IGHV3-66A0A0C4DH42 116 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 INS-IGF2F8WCM5 200 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 DNALI1O14645 258 aaPredicted RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 MAGEB4O15481 346 aaPredicted RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 GABARAPO95166 117 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 ACSM4P0C7M7 580 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 MYL2P10916 166 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 CCNB1P14635 433 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 RAB3BP20337 219 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 MAGP20916 626 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 MAS1LP35410 378 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 CEACAM6P40199 344 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 RPS9P46781 194 aaKnown RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 RPS15P62841 145 aaKnown RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 MXD1Q05195 221 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 GINS1Q14691 196 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 CHRNA6Q15825 494 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 ALKBH6Q3KRA9 238 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 PTPN20Q4JDL3 420 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 SOHLH1Q5JUK2 328 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 THEM4Q5T1C6 240 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 ZFP2Q6ZN57 461 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 BZW1Q7L1Q6 419 aaKnown RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 LUZP2Q86TE4 346 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 CMTM1Q8IZ96 169 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 OR10J6PQ8NGY7 276 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 DUS3LQ96G46 650 aaKnown RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 DNAJC1Q96KC8 554 aaKnown RBP2.54□□□□□ -2
HMGB1P28-201ENST00000507778 OR5B12Q96R08 314 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 PANX1Q96RD7 426 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 ISYNA1Q9NPH2 558 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 PSG8Q9UQ74 426 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 ST3GAL6Q9Y274 331 aa2.54□□□□□ -2
HMGB1P28-201ENST00000507778 IGHV3-74A0A0B4J1X5 117 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 IGHV5-51A0A0C4DH38 117 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 EIF3HO15372 352 aaKnown RBP eCLIP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 MED6O75586 246 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 OR2F2O95006 317 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 IGKV3-11P04433 115 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 F2RP25116 425 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 GTF2E2P29084 291 aaKnown RBP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 GPX4P36969 197 aaPredicted RBP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 CSNK1A1P48729 337 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 STXBP1P61764 594 aaKnown RBP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 MERTKQ12866 999 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 ERCC8Q13216 396 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 SELENBP1Q13228 472 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 MAB21L1Q13394 359 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 SF3A2Q15428 464 aaKnown RBP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 UBE2SQ16763 222 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 FAM92BQ6ZTR7 304 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 NCCRP1Q6ZVX7 275 aaPredicted RBP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 SCD5Q86SK9 330 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 TMEM150AQ86TG1 271 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 FAM86B1Q8N7N1 296 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 CCDC148Q8NFR7 591 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 OR2A1Q8NGT9 310 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 STARD4Q96DR4 205 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 FOPNLQ96NB1 174 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 GSDMAQ96QA5 445 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 SLC25A2Q9BXI2 301 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 KRTAP4-4Q9BYR3 166 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 PARP12Q9H0J9 701 aaKnown RBP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 FAM49BQ9NUQ9 324 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 CCDC59Q9P031 241 aaKnown RBP2.53□□□□□ -2
HMGB1P28-201ENST00000507778 GCNT4Q9P109 453 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 PRO0461Q9UI25 63 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 PSG11Q9UQ72 335 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 TMED5Q9Y3A6 229 aa2.53□□□□□ -2
HMGB1P28-201ENST00000507778 TRBV9A0A0B4J1U6 114 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 LYRM9A8MSI8 78 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 NUPL2O15504 423 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 CHST1O43916 411 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 AIREO43918 545 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 EIF4E2O60573 245 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 ENTPD5O75356 428 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms