RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MOBPQ13875 183 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 PPP1R7Q15435 360 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 THEM4Q5T1C6 240 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 ANKRD26P1Q6NSI1 321 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 DNAJC24Q6P3W2 148 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 DUX4L9Q6RFH8 374 aaPredicted RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 MS4A15Q8N5U1 240 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 NOXO1Q8NFA2 376 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 B3GNT7Q8NFL0 401 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 ABHD3Q8WU67 409 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 CCDC126Q96EE4 140 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 CNDP1Q96KN2 507 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 LINC00477Q96M19 166 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 SERPINB12Q96P63 405 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 ATP5SQ99766 215 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 HMG20AQ9NP66 347 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 KCNJ16Q9NPI9 418 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 SAMSN1Q9NSI8 373 aaKnown RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 PSMC3IPQ9P2W1 217 aaPredicted RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 UVRAGQ9P2Y5 699 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 CTSFQ9UBX1 484 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 OPN4Q9UHM6 478 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 ING4Q9UNL4 249 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 GOLT1BQ9Y3E0 138 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 TMEM14AQ9Y6G1 99 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 CNTNAP1P78357 1384 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 MAPK8IP3Q9UPT6 1336 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 IGLV1-50A0A075B6I6 118 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 ZNF816-ZNF321PA0A0X1KG74 233 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 SPECC1L-ADORA2AF8WAN1 911 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 MPHOSPH10O00566 681 aaKnown RBP1.92□□□□□ -2.1
VPS50-219ENST00000495039 MRPS12O15235 138 aaKnown RBP1.92□□□□□ -2.1
VPS50-219ENST00000495039 SRP72O76094 671 aaKnown RBP1.92□□□□□ -2.1
VPS50-219ENST00000495039 CST1P01037 141 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 ADRA2AP08913 450 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 IGHV1-8P0DP01 117 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 CCNB1P14635 433 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 ZNF250P15622 560 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 TCN2P20062 427 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 RAB3BP20337 219 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 GDI1P31150 447 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 HNRNPH3P31942 346 aaKnown RBP1.92□□□□□ -2.1
VPS50-219ENST00000495039 MAS1LP35410 378 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 CCNHP51946 323 aaPredicted RBP1.92□□□□□ -2.1
VPS50-219ENST00000495039 ACTR3P61158 418 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 RGNQ15493 299 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 PTPN20Q4JDL3 420 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 SPECC1LQ69YQ0 1117 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 RNASEKQ6P5S7 137 aaKnown RBP1.92□□□□□ -2.1
VPS50-219ENST00000495039 ARL9Q6T311 187 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 TMEM107Q6UX40 140 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 NIPA1Q7RTP0 329 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 RIMKLAQ8IXN7 391 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 RNF182Q8N6D2 247 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 ZNF606Q8WXB4 792 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 SHC3Q92529 594 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 PKNOX2Q96KN3 472 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 SYNDIG1Q9H7V2 258 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 METTL7AQ9H8H3 244 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 C12orf10Q9HB07 376 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 STARD10Q9Y365 291 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 TMED5Q9Y3A6 229 aa1.92□□□□□ -2.1
VPS50-219ENST00000495039 CSDC2Q9Y534 153 aaKnown RBP1.92□□□□□ -2.1
VPS50-219ENST00000495039 PLA2R1Q13018 1463 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 USP47Q96K76 1375 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 IGLV2-18A0A075B6J9 118 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 SYNJ2BP-COX16A0A087WUM0 186 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF705GA8MUZ8 300 aaPredicted RBP1.91□□□□□ -2.1
VPS50-219ENST00000495039 RBFOX2O43251 390 aaKnown RBP eCLIP1.91□□□□□ -2.1
VPS50-219ENST00000495039 DPM1O60762 260 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 RBBP9O75884 186 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF24P17028 368 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 FOXN2P32314 431 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 CX3CR1P49238 355 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 SYCNQ0VAF6 134 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 LY6EQ16553 131 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 FAM78AQ5JUQ0 283 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF684Q5T5D7 378 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 Q5W150 140 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 IGFL1Q6UW32 110 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ARRDC1Q8N5I2 433 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF615Q8N8J6 731 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF709Q8N972 641 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 OR10J6PQ8NGY7 276 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 KCNG3Q8TAE7 436 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF502Q8TBZ5 544 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 SLC7A13Q8TCU3 470 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 SLC2A14Q8TDB8 520 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 DEDD2Q8WXF8 326 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 TPD52L3Q96J77 140 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF681Q96N22 645 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZNF382Q96SR6 550 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 ILKAPQ9H0C8 392 aaPredicted RBP1.91□□□□□ -2.1
VPS50-219ENST00000495039 FGF20Q9NP95 211 aaPredicted RBP1.91□□□□□ -2.1
VPS50-219ENST00000495039 ZDHHC4Q9NPG8 344 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 SIRT7Q9NRC8 400 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 GPATCH2LQ9NWQ4 482 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 PISDQ9UG56 409 aa1.91□□□□□ -2.1
VPS50-219ENST00000495039 LSM7Q9UK45 103 aaKnown RBP1.91□□□□□ -2.1
VPS50-219ENST00000495039 TRAV40A0A0B4J280 105 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms