RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DYRK1AQ13627 763 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 TMUB2Q71RG4 321 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 LRFN5Q96NI6 719 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 TAS2R5Q9NYW4 299 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 PLSCR5A0PG75 271 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 DCDC2BA2VCK2 349 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 ITGA10O75578 1167 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 DEFA5Q01523 94 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 PHF7Q9BWX1 381 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 WWTR1Q9GZV5 400 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 EXO5Q9H790 373 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 NPDC1Q9NQX5 325 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 ANKRD20A5PA0PJZ0 165 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 WNT11O96014 354 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 RLN2P04090 185 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 NMBP08949 121 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 HOXD4P09016 255 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 ALKBH1Q13686 389 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 ELAVL1Q15717 326 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 DND1Q8IYX4 353 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC25A45Q8N413 288 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 KLHL15Q96M94 604 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 PELOQ9BRX2 385 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 ACTR6Q9GZN1 396 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 DUSP15Q9H1R2 295 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 ATG5Q9H1Y0 275 aa14.89□□□□□ -0.03
CCDC88B-210ENST00000494566 URB1O60287 2271 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 RBBP9O75884 186 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 TMPRSS9Q7Z410 1059 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 CDC20BQ86Y33 519 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 GPR119Q8TDV5 335 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 ZCCHC4Q9H5U6 513 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF354AO60765 605 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC25A12O75746 678 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 ABHD16AO95870 558 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 NHLRC3Q5JS37 347 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 ARSKQ6UWY0 536 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 PRSS35Q8N3Z0 413 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 LAT2Q9GZY6 243 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 ADAM19Q9H013 955 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 SLITRK2Q9H156 845 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 UCK1Q9HA47 277 aa14.88□□□□□ -0.03
CCDC88B-210ENST00000494566 A0A1B0GUH1 482 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 SHISA8B8ZZ34 492 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 GPRIN2O60269 458 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 MPZL1O95297 269 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 HLA-DOBP13765 273 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF28P17035 718 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 POU3F4P49335 361 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 SEC61A1P61619 476 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 CD163Q86VB7 1156 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 METTL21AQ8WXB1 218 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC25A28Q96A46 364 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 FSCN3Q9NQT6 498 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 FGF21Q9NSA1 209 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 MMACHCQ9Y4U1 282 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 PI4KAP42356 2102 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 TMEM272A0A1B0GTI8 110 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC22A23A1A5C7 686 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 PDCD5O14737 125 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 RP2O75695 350 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 RENP00797 406 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 BGLAPP02818 100 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 ITGA5P08648 1049 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC25A1P53007 311 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 DMWDQ09019 674 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 BIKQ13323 160 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 IL10RAQ13651 578 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 ACKR1Q16570 336 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 FAM69AQ5T7M9 428 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 FAM69BQ5VUD6 431 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC6A19Q695T7 634 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 OGFOD3Q6PK18 319 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 OR4S1Q8NGB4 309 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 REG4Q9BYZ8 158 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 EXOSC3Q9NQT5 275 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 NUP210LQ5VU65 1888 aa14.87□□□□□ -0.03
CCDC88B-210ENST00000494566 EIF1AYO14602 144 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 GSTZ1O43708 216 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 TSPAN2O60636 221 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC16A7O60669 478 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 TGM6O95932 706 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 IFNGR1P15260 489 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 S100A11P31949 105 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 CAPZA2P47755 286 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 COL19A1Q14993 1142 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 Q499Y3 187 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 RTN4RL2Q86UN3 420 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 OR2G2Q8NGZ5 317 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 FAM46BQ96A09 425 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 COPS7AQ9UBW8 275 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 EPHA6Q9UF33 1036 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 FRYQ5TBA9 3013 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 UBE2QL1A1L167 161 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 XKRYO14609 159 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 LMX1BO60663 402 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 SPARCP09486 303 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 TACSTD2P09758 323 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 ICAM2P13598 275 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 ALOX5APP20292 161 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms