RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SRSF10O75494 262 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 FOLR3P41439 243 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 DBX2Q6ZNG2 339 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 PRSS45Q7RTY3 260 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 TMPRSS12Q86WS5 348 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 ST7LQ8TDW4 575 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 THRSPQ92748 146 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 OR5B2Q96R09 309 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 NEK6Q9HC98 313 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 GTF2A1LQ9UNN4 478 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 CACNA1CQ13936 2221 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 ANXA2P2A6NMY6 339 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 ANXA2P07355 339 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 ZNF883P0CG24 379 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 ADH6P28332 368 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 MPLP40238 635 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 EIF1P41567 113 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 PLCZ1Q86YW0 608 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 DND1Q8IYX4 353 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 TOMM5Q8N4H5 51 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 ZBTB44Q8NCP5 570 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 SMIM4Q8WVI0 70 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 WDFY3Q8IZQ1 3526 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 AQP8O94778 261 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 DCXRQ7Z4W1 244 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 LINC00346Q8IVM7 164 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 SIAH3Q8IW03 269 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 UEVLDQ8IX04 471 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 RHBDD1Q8TEB9 315 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 SLC25A43Q8WUT9 341 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 ZBTB8AQ96BR9 441 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 MRPL13Q9BYD1 178 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 ARRDC1-AS1Q9H2J1 176 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 CDCP1Q9H5V8 836 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 ZNF160Q9HCG1 818 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 ETV7Q9Y603 341 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 ARPC4-TTLL3A0A0A6YYG9 625 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 NSG1A0A0A6YYJ2 146 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 TMEM221A6NGB7 291 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 INMT-MINDY4F8WBC2 141 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 M0R296 226 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 RAD1O60671 282 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 HRGP04196 525 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 SYNPRQ8TBG9 265 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 AUNIPQ9H7T9 357 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 KLHL9Q9P2J3 617 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 FBXL3Q9UKT7 428 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 N6AMT1Q9Y5N5 214 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 R4GMQ9 66 aa18.85■□□□□ 0.61
CCDC88B-208ENST00000492980 A0A1W2PQ72 361 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 ZNF814B7Z6K7 855 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 H0YC42 278 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 CCL3P10147 92 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 CSRP1P21291 193 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 SSR4P51571 173 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 NDUFAF7Q7L592 441 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 SERPINA12Q8IW75 414 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 GLB1L2Q8IW92 636 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 NTNG2Q96CW9 530 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 ANGPTL4Q9BY76 406 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 MOV10Q9HCE1 1003 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 FOXJ3Q9UPW0 622 aa18.84■□□□□ 0.61
CCDC88B-208ENST00000492980 TRAF3IP2O43734 574 aaPredicted RBP18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 RAB40ALP0C0E4 278 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 SP9P0CG40 484 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 SFTPDP35247 375 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 ASPHD2Q6ICH7 369 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 LINGO2Q7L985 606 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 RAB40AQ8WXH6 277 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 MIB2Q96AX9 1013 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 DMRTB1Q96MA1 342 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 RBP7Q96R05 134 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 PROK2Q9HC23 129 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 SH2D2AQ9NP31 389 aa18.83■□□□□ 0.61
CCDC88B-208ENST00000492980 A0A087WZY1 265 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 MASP2O00187 686 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 STK17BO94768 372 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 BTG1P62324 171 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 KLF9Q13886 244 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 ZNF239Q16600 458 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 TMEM176BQ3YBM2 270 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 DCAF12Q5T6F0 453 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 MTFR2Q6P444 385 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 ZNF227Q86WZ6 799 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 PAQR8Q8TEZ7 354 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 C11orf40Q8WZ69 217 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 HAVCR1Q96D42 359 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 S100A16Q96FQ6 103 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 ZNF486Q96H40 463 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 AKAP7Q9P0M2 348 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 PISDQ9UG56 409 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 STEAP1Q9UHE8 339 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 EMC9Q9Y3B6 208 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 HDGFL3Q9Y3E1 203 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 LOXL2Q9Y4K0 774 aa18.83■□□□□ 0.6
CCDC88B-208ENST00000492980 CENPXA8MT69 81 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 ARSBP15848 533 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 FKBP2P26885 142 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 CFPP27918 469 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms