RNA–Protein interactions for RNA: ENST00000473066.5

MRPL55-226, Transcript of mitochondrial ribosomal protein L55, human

TSL 3

Gene MRPL55, Length 820 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-226	ENST00000473066	RPS6KA3	P51812	740 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	LCN6	P62502	163 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	NKPD1	Q17RQ9	610 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	TMEM249	Q2WGJ8	235 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	MTX3	Q5HYI7	312 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	ARHGAP24	Q8N264	748 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	CLDN22	Q8N7P3	220 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	ZNF540	Q8NDQ6	660 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	FANK1	Q8TC84	345 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	NABP1	Q96AH0	204 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	NSL1	Q96IY1	281 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	DHRS1	Q96LJ7	313 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	TPK1	Q9H3S4	243 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	YAE1D1	Q9NRH1	226 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	EIF3K	Q9UBQ5	218 aa	Known RBP	13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	REV1	Q9UBZ9	1251 aa		13.43	□□□□□ -0.26
MRPL55-226	ENST00000473066	TEX13C	A0A0J9YWL9	993 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	TMEM129	A0AVI4	362 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	C12orf71	A8MTZ7	269 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	OR10H3	O60404	316 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	CST2	P09228	141 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	CCL2	P13500	99 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	STOM	P27105	288 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	LAP3	P28838	519 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	OMP	P47874	163 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	KLF3	P57682	345 aa	Predicted RBP	13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	KRTAP1-1	Q07627	177 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	FHL1	Q13642	323 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	IQCC	Q4KMZ1	466 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	MEST	Q5EB52	335 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	FAM27B	Q5VT28	67 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	ADCK1	Q86TW2	530 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	ZDHHC21	Q8IVQ6	265 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	FITM2	Q8N6M3	262 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	C11orf40	Q8WZ69	217 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	RASD2	Q96D21	266 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	GPX7	Q96SL4	187 aa	Predicted RBP	13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	MUC13	Q9H3R2	512 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	RERGL	Q9H628	205 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	FZR1	Q9UM11	496 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	SIGLEC7	Q9Y286	467 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	ZFHX3	Q15911	3703 aa		13.42	□□□□□ -0.26
MRPL55-226	ENST00000473066	PRSS37	A4D1T9	235 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	SOCS2	O14508	198 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	MT-ND5	P03915	603 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	SEMG1	P04279	462 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	CALB2	P22676	271 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	RRM2	P31350	389 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	SLC6A6	P31641	620 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	ALDH3B1	P43353	468 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	NR4A2	P43354	598 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	SEC23B	Q15437	767 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	DNM1P34	Q6PK57	102 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	SMARCD3	Q6STE5	483 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	CYP2R1	Q6VVX0	501 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	DPY19L2P2	Q6ZN68	376 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	FOXL2NB	Q6ZUU3	175 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	FAM122B	Q7Z309	247 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	ZCCHC24	Q8N2G6	241 aa	Known RBP	13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	PAQR4	Q8N4S7	273 aa	Predicted RBP	13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	OR1J1	Q8NGS3	322 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	AKR7L	Q8NHP1	331 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	SYNPR	Q8TBG9	265 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	UBASH3B	Q8TF42	649 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	POLE4	Q9NR33	117 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	ACTR3B	Q9P1U1	418 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	POLR1D	Q9Y2S0	133 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	TIMM10B	Q9Y5J6	103 aa		13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066	SON	P18583	2426 aa	Known RBP	13.41	□□□□□ -0.26
MRPL55-226	ENST00000473066		A0A096LNT2	108 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	C5orf49	A4QMS7	147 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066		A8MV72	311 aa	Predicted RBP	13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	KHDRBS3	O75525	346 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	APEH	P13798	732 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	GZMK	P49863	264 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	UCP2	P55851	309 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	PSG4	Q00888	419 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	SCRN3	Q0VDG4	424 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	MAD2L1BP	Q15013	274 aa	Predicted RBP	13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	MOG	Q16653	247 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	MSMP	Q1L6U9	139 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	SYT9	Q86SS6	491 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	LRP11	Q86VZ4	500 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	JAZF1	Q86VZ6	243 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	FOXN4	Q96NZ1	517 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	WAC	Q9BTA9	647 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	ZNF416	Q9BWM5	594 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	OR2H1	Q9GZK4	316 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	SYT4	Q9H2B2	425 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	IL1RAP	Q9NPH3	570 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	NRIP3	Q9NQ35	241 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	SLCO1C1	Q9NYB5	712 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	TAAR3P	Q9P1P4	343 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	IL20RA	Q9UHF4	553 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	ADAM21	Q9UKJ8	722 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	NDRG4	Q9ULP0	352 aa	Known RBP	13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	IER3IP1	Q9Y5U9	82 aa		13.4	□□□□□ -0.26
MRPL55-226	ENST00000473066	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.39	□□□□□ -0.27	2e-6	■■■■□ 23.6
MRPL55-226	ENST00000473066	DOK2	O60496	412 aa		13.39	□□□□□ -0.27
MRPL55-226	ENST00000473066	SLC16A7	O60669	478 aa		13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms