RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 LCN6P62502 163 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 FHL1Q13642 323 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 THEM4Q5T1C6 240 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 FAM205BPQ63HN1 556 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 MBOAT2Q6ZWT7 520 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 RRM2BQ7LG56 351 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 CYP4Z1Q86W10 505 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 RNF113BQ8IZP6 322 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 CPEB3Q8NE35 698 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF519Q8TB69 540 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 SNX33Q8WV41 574 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 C11orf40Q8WZ69 217 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 CMTM5Q96DZ9 223 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 BCL2L14Q9BZR8 327 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 NARFLQ9H6Q4 476 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 ABCD2Q9UBJ2 740 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 ENPP4Q9Y6X5 453 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 WNK2Q9Y3S1 2297 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 A6NIZ1 184 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 CDC42EP2O14613 210 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF250P15622 560 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 COL8A2P25067 703 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 STOMP27105 288 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 LAP3P28838 519 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 MAGEB1P43366 347 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 GPR6P46095 362 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 RAP1BP61224 184 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 RAP1AP62834 184 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 GLO1Q04760 184 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 OR1J1Q8NGS3 322 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 FNDC8Q8TC99 324 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 RDH5Q92781 318 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 YIPF5Q969M3 257 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 MYLK2Q9H1R3 596 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 ADA2Q9NZK5 511 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 GPR160Q9UJ42 338 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 RPS6KA6Q9UK32 745 aa13.45□□□□□ -0.26
CCDC88B-205ENST00000472524 TANC2Q9HCD6 1990 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 IGLV3-9A0A075B6K5 115 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 C5orf49A4QMS7 147 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 HNF1AP20823 631 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 ACHEP22303 614 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 GUCA1AP43080 201 aaPredicted RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 GDI2P50395 445 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 PSG4Q00888 419 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 ANKDD1AQ495B1 522 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 FGD3Q5JSP0 725 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 SPATA46Q5T0L3 261 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 FAM27BQ5VT28 67 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 TMEM154Q6P9G4 183 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 TSEN54Q7Z6J9 526 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 RNF148Q8N7C7 305 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 LINC01356Q8N9X3 169 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 FAM46AQ96IP4 442 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 POM121L2Q96KW2 1035 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 NSRP1Q9H0G5 558 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 NMNAT1Q9HAN9 279 aaPredicted RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 SPAG4Q9NPE6 437 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 HINT3Q9NQE9 182 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF275Q9NSD4 429 aaPredicted RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 TMEM5Q9Y2B1 443 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 ADAM18Q9Y3Q7 739 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 FAM32AQ9Y421 112 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 V9GYQ6 96 aa13.44□□□□□ -0.26
CCDC88B-205ENST00000472524 LOC100509620A0A075B734 347 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 C17orf100A8MU93 164 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 PPIHO43447 177 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 ATP8B1O43520 1251 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 DIRAS1O95057 198 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 H1F0P07305 194 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 CD14P08571 375 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 CST2P09228 141 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF26P17031 533 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 DRD4P21917 467 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 PRDX6P30041 224 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 WNT5AP41221 380 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 CR1LQ2VPA4 569 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 ZBED5Q49AG3 693 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 GLYATQ6IB77 296 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 TMPRSS11FQ6ZWK6 438 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF101Q8IZC7 436 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 SLC7A13Q8TCU3 470 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 GTF3AQ92664 365 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 HPS1Q92902 700 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 Q96M85 177 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF570Q96NI8 536 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 OR2H1Q9GZK4 316 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 NDEL1Q9GZM8 345 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 WNT5BQ9H1J7 359 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 ANKRD19PQ9H560 264 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 SLCO1C1Q9NYB5 712 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 EIF3KQ9UBQ5 218 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 GRHPRQ9UBQ7 328 aa13.43□□□□□ -0.26
CCDC88B-205ENST00000472524 XKRYO14609 159 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 TPD52L2O43399 206 aaKnown RBP13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 SNX3O60493 162 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 CDC14BO60729 498 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 GMNNO75496 209 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 MSR1P21757 451 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 CDH15P55291 814 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms