RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 TTLQ8NG68 377 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 OR2L3Q8NG85 312 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 OR6F1Q8NGZ6 308 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 OR10G6Q8NH81 332 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 TWIST2Q8WVJ9 160 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 NAT6Q93015 286 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 RILPQ96NA2 401 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 RHBGQ9H310 441 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 ELOVL6Q9H5J4 265 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 C5orf66Q9H5L9 145 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 MEAF6Q9HAF1 191 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 MRPS30Q9NP92 439 aaKnown RBP4.06□□□□□ -1.76
CCDC39-202ENST00000471307 FARSBQ9NSD9 589 aaKnown RBP4.06□□□□□ -1.76
CCDC39-202ENST00000471307 CENPMQ9NSP4 180 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 PNPLA3Q9NST1 481 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 NMRK1Q9NWW6 199 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 ABCD2Q9UBJ2 740 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 MARCOQ9UEW3 520 aaPredicted RBP4.06□□□□□ -1.76
CCDC39-202ENST00000471307 TAC3Q9UHF0 121 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 ZNF490Q9ULM2 529 aaPredicted RBP4.06□□□□□ -1.76
CCDC39-202ENST00000471307 FOXA2Q9Y261 457 aaPredicted RBP4.06□□□□□ -1.76
CCDC39-202ENST00000471307 PLEKHA6Q9Y2H5 1048 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 TIMM22Q9Y584 194 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 OTOGLQ3ZCN5 2332 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 PCNX2A6NKB5 2137 aa4.06□□□□□ -1.76
CCDC39-202ENST00000471307 SNRNP200O75643 2136 aaKnown RBP4.06□□□□□ -1.76
CCDC39-202ENST00000471307 MDC1Q14676 2089 aaKnown RBP4.06□□□□□ -1.76
CCDC39-202ENST00000471307 EP300Q09472 2414 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 ASCC3Q8N3C0 2202 aaKnown RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 IGHV1OR21-1A0A087WYE8 117 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 IGKV1-8A0A0C4DH67 115 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 GOLGA8QA0A0J9YX86 632 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 A0A0J9YY10 115 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 A0A1W2PQ72 361 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 FAM168BA1KXE4 195 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 GSAPA4D1B5 854 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 GOLGA8OA6NCC3 632 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 ANKDD1BA6NHY2 528 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 GOLGA8NF8WBI6 632 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 SDHDO14521 159 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CDX4O14627 284 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 TOX3O15405 576 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 B4GAT1O43505 415 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 DUX1O43812 170 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 SRPX2O60687 465 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CCDC22O60826 627 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 DCTN3O75935 186 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 OR6A2O95222 327 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 LDOC1O95751 146 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 AK1P00568 194 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 PDYNP01213 254 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 GP1BAP07359 652 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 SERPINA6P08185 405 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 LINC00032P0C843 101 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 EZRP15311 586 aaKnown RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 UGT2B7P16662 529 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 PSMB5P28074 263 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CD1CP29017 333 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 PEBP1P30086 187 aaKnown RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CAPZBP47756 277 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 HNRNPFP52597 415 aaKnown RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 ARFIP1P53367 373 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 FOXA1P55317 472 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 RPS15AP62244 130 aaKnown RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CSNK1G2P78368 415 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 REEP5Q00765 189 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 EMX2Q04743 252 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 MRPL28Q13084 256 aaKnown RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 ABRAXAS2Q15018 415 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 IMPG1Q17R60 797 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 ECSCRQ19T08 205 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 LBHQ53QV2 105 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 XKR7Q5GH72 579 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 SLC27A4Q6P1M0 643 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 WDR74Q6RFH5 385 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 WDR88Q6ZMY6 472 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 Q71RC1 249 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 PAQR7Q86WK9 346 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CROCCP3Q8IVE0 287 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 TMEM99Q8N816 258 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 TRPV3Q8NET8 790 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 TMEM185AQ8NFB2 350 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 FLVCR1-AS1Q8TAF5 88 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 AGR3Q8TD06 166 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 C10orf82Q8WW14 230 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 SELENOMQ8WWX9 145 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 TUBGCP3Q96CW5 907 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 C19orf60Q96EN9 201 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CMTM7Q96FZ5 175 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 PPP3R2Q96LZ3 170 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 PRAP1Q96NZ9 151 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 KCNA7Q96RP8 456 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 NRTNQ99748 197 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 DPH7Q9BTV6 452 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 TBC1D10AQ9BXI6 508 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 CHRNA10Q9GZZ6 450 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 WDR55Q9H6Y2 383 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-202ENST00000471307 COQ10BQ9H8M1 238 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 TMEM9BQ9NQ34 198 aa4.05□□□□□ -1.76
CCDC39-202ENST00000471307 ANAPC11Q9NYG5 84 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms