RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PUDPQ08623 228 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 SPOCK1Q08629 439 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 WDR74Q6RFH5 385 aaPredicted RBP17.11■□□□□ 0.33
VIM-203ENST00000469543 CREB3L2Q70SY1 520 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 NLRC3Q7RTR2 1065 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 SPEM1Q8N4L4 309 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 NFAM1Q8NET5 270 aaPredicted RBP17.11■□□□□ 0.33
VIM-203ENST00000469543 OR1J4Q8NGS1 313 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 RNF128Q8TEB7 428 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 RAB40AQ8WXH6 277 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 EMC7Q9NPA0 242 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 CENPMQ9NSP4 180 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 VSX1Q9NZR4 365 aaPredicted RBP17.11■□□□□ 0.33
VIM-203ENST00000469543 ZNF69Q9UC07 566 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 MRPS18BQ9Y676 258 aaKnown RBP17.11■□□□□ 0.33
VIM-203ENST00000469543 EML6Q6ZMW3 1958 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 MEIKINA0A087WXM9 373 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 PYCARD-AS1I3L0S3 204 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 K7ESF4 209 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 STARD6P59095 220 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 GLO1Q04760 184 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 FOXF1Q12946 379 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 CSRP2Q16527 193 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 GLYATL3Q5SZD4 288 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 RHBDD2Q6NTF9 364 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 NUP54Q7Z3B4 507 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 ZNF227Q86WZ6 799 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 FAM3DQ96BQ1 224 aa17.11■□□□□ 0.33
VIM-203ENST00000469543 CPAMD8Q8IZJ3 1885 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 SCRG1O75711 98 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 KLK2P20151 261 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 DNASE1P24855 282 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 ZNF81P51508 661 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 DMRTC1Q5HYR2 192 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 PAPD4Q6PIY7 484 aaKnown RBP17.1■□□□□ 0.33
VIM-203ENST00000469543 NHLRC1Q6VVB1 395 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 DPCDQ9BVM2 203 aaPredicted RBP17.1■□□□□ 0.33
VIM-203ENST00000469543 ZNF436Q9C0F3 470 aaPredicted RBP17.1■□□□□ 0.33
VIM-203ENST00000469543 CHRDQ9H2X0 955 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 HEXA-AS1Q9H8Q6 139 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 SEMA5BQ9P283 1151 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 GGT3PA6NGU5 568 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 XRCC3O43542 346 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 CCL7P80098 99 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 TMEM225Q6GV28 225 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 UXS1Q8NBZ7 420 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 OR10G3Q8NGC4 313 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 DHDHQ9UQ10 334 aa17.1■□□□□ 0.33
VIM-203ENST00000469543 ACOT7O00154 380 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 OR2J2O76002 312 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 SIX6O95475 246 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 RAF1P04049 648 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 CXCL12P48061 93 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 DHPSP49366 369 aaPredicted RBP17.09■□□□□ 0.33
VIM-203ENST00000469543 SLC26A5P58743 744 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 TLE3Q04726 772 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 PRSS42Q7Z5A4 293 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 WDR77Q9BQA1 342 aaPredicted RBP17.09■□□□□ 0.33
VIM-203ENST00000469543 C7orf50Q9BRJ6 194 aaKnown RBP17.09■□□□□ 0.33
VIM-203ENST00000469543 ATG5Q9H1Y0 275 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 RANBP3Q9H6Z4 567 aaPredicted RBP17.09■□□□□ 0.33
VIM-203ENST00000469543 KLRF1Q9NZS2 232 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 MEN1O00255 615 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 MPC2O95563 127 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 ANOS1P23352 680 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 PER3P56645 1201 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 C2orf68Q2NKX9 166 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 TMEM71Q6P5X7 295 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 LUZP2Q86TE4 346 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 OR8H3Q8N146 312 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 OR4C16Q8NGL9 310 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 OIT3Q8WWZ8 545 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 C5orf34Q96MH7 638 aa17.09■□□□□ 0.33
VIM-203ENST00000469543 TMEM272A0A1B0GTI8 110 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 ICMTO60725 284 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 ALOX12BO75342 701 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 RBBP9O75884 186 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 ECDO95905 644 aaPredicted RBP17.08■□□□□ 0.33
VIM-203ENST00000469543 ENPP1P22413 925 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 RIDAP52758 137 aaKnown RBP17.08■□□□□ 0.33
VIM-203ENST00000469543 BLVRAP53004 296 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 MFAP5Q13361 173 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 THOC7Q6I9Y2 204 aaKnown RBP17.08■□□□□ 0.33
VIM-203ENST00000469543 ANKRD16Q6P6B7 361 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 TEX261Q6UWH6 196 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 ZNF248Q8NDW4 579 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 SLC26A10Q8NG04 563 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 SLC25A44Q96H78 314 aaPredicted RBP17.08■□□□□ 0.33
VIM-203ENST00000469543 ACTR6Q9GZN1 396 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 CHST6Q9GZX3 395 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 MRPL39Q9NYK5 338 aaKnown RBP17.08■□□□□ 0.33
VIM-203ENST00000469543 U3KQ87 197 aa17.08■□□□□ 0.33
VIM-203ENST00000469543 A0A1W2PNR3 127 aa17.08■□□□□ 0.32
VIM-203ENST00000469543 CIB4A0PJX0 185 aa17.08■□□□□ 0.32
VIM-203ENST00000469543 SIGLEC6O43699 453 aa17.08■□□□□ 0.32
VIM-203ENST00000469543 CFDP00746 253 aaPredicted RBP17.08■□□□□ 0.32
VIM-203ENST00000469543 CD3DP04234 171 aa17.08■□□□□ 0.32
VIM-203ENST00000469543 ROM1Q03395 351 aa17.08■□□□□ 0.32
VIM-203ENST00000469543 MOGAT2Q3SYC2 334 aa17.08■□□□□ 0.32
VIM-203ENST00000469543 ZBTB37Q5TC79 503 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms