RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FOXRED2Q8IWF2 684 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 SLC39A11Q8N1S5 342 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 TMIEQ8NEW7 156 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 STOML3Q8TAV4 291 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 ZNF558Q96NG5 402 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 ZNF285Q96NJ3 590 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 DZANK1Q9NVP4 752 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 EPHA6Q9UF33 1036 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 LAMP5Q9UJQ1 280 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 NOTCH4Q99466 2003 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 C5orf52A6NGY3 159 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 H0YIZ8 118 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 HRKO00198 91 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 ABHD16AO95870 558 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 CYB5AP00167 134 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 RCC1P18754 421 aaPredicted RBP10.59□□□□□ -0.71
CPSF3-202ENST00000460593 PI3P19957 117 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 SERPINF1P36955 418 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 GLYATL3Q5SZD4 288 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 BAP18Q8IXM2 172 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 ZSCAN4Q8NAM6 433 aaPredicted RBP10.59□□□□□ -0.71
CPSF3-202ENST00000460593 OR4K17Q8NGC6 315 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 CD99L2Q8TCZ2 262 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 PHYHIPQ92561 330 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 FAM46BQ96A09 425 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 AKR1E2Q96JD6 320 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 CMKLR1Q99788 373 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 RPS10P5Q9NQ39 176 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 STARD5Q9NSY2 213 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 DNAJB12Q9NXW2 375 aaKnown RBP10.59□□□□□ -0.71
CPSF3-202ENST00000460593 RCC2Q9P258 522 aaKnown RBP10.59□□□□□ -0.71
CPSF3-202ENST00000460593 KCNG2Q9UJ96 466 aa10.59□□□□□ -0.71
CPSF3-202ENST00000460593 SRPX2O60687 465 aaPredicted RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 CLN5O75503 358 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 CD79AP11912 226 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 SLC25A4P12235 298 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 LSSP48449 732 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 DMWDQ09019 674 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 C10orf91Q5T1B1 145 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 JAZF1Q86VZ6 243 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 RPS4Y2Q8TD47 263 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 FOXRED1Q96CU9 486 aaPredicted RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 PHYHIPLQ96FC7 376 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 COX14Q96I36 57 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 NECAB3Q96P71 396 aaPredicted RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 MOGAT1Q96PD6 335 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 UPB1Q9UBR1 384 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 C1orf196B1AJZ1 125 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 BRINP1O60477 761 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 CDC40O60508 579 aaKnown RBP eCLIP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 PRNPP04156 253 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 CD74P04233 296 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 ERCC1P07992 297 aaPredicted RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 SNRNP70P08621 437 aaKnown RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 FAM157CP0CG43 387 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 SMIM6P0DI80 62 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 HSD17B2P37059 387 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 P2RY2P41231 377 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 SPOCK1Q08629 439 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 SREBF2Q12772 1141 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 VWA2Q5GFL6 755 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 TMEM151BQ8IW70 566 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 NUDCD2Q8WVJ2 157 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 HIST1H2BAQ96A08 127 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 IP6K3Q96PC2 410 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 MAP3K3Q99759 626 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 KLHDC3Q9BQ90 382 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 RSPH9Q9H1X1 276 aaPredicted RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 CHMP1AQ9HD42 196 aaPredicted RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 CYTL1Q9NRR1 136 aa10.58□□□□□ -0.72
CPSF3-202ENST00000460593 MRPS18BQ9Y676 258 aaKnown RBP10.58□□□□□ -0.72
CPSF3-202ENST00000460593 A0A1W2PPH5 198 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 C9orf170A2RU37 121 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 LMX1BO60663 402 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 ADAP1O75689 374 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 EML2O95834 649 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 ZBTB25P24278 435 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 LPAR6P43657 344 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 DPTQ07507 201 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 ZNF585AQ6P3V2 769 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 POMZP3Q6PJE2 187 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 RAB42Q8N4Z0 105 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 GPR148Q8TDV2 347 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 SEC11CQ9BY50 192 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 NMNAT2Q9BZQ4 307 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 LMAN2LQ9H0V9 348 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 ALX4Q9H161 411 aaPredicted RBP10.57□□□□□ -0.72
CPSF3-202ENST00000460593 MKKSQ9NPJ1 570 aaPredicted RBP10.57□□□□□ -0.72
CPSF3-202ENST00000460593 TAS2R4Q9NYW5 299 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 C19orf53Q9UNZ5 99 aaPredicted RBP10.57□□□□□ -0.72
CPSF3-202ENST00000460593 DTX4Q9Y2E6 619 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 TRBV5-7A0A0A0MS05 114 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 LOC100289279A0A1B0GTE1 492 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 MED19A0JLT2 244 aaPredicted RBP10.57□□□□□ -0.72
CPSF3-202ENST00000460593 OTOL1A6NHN0 477 aaPredicted RBP10.57□□□□□ -0.72
CPSF3-202ENST00000460593 C1QTNF3-AMACRE9PGA6 284 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 FBXO24O75426 580 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 AGR2O95994 175 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 PNPP00491 289 aa10.57□□□□□ -0.72
CPSF3-202ENST00000460593 CD1AP06126 327 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms