RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 COL28A1Q2UY09 1125 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 EIPR1Q53HC9 387 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 OCIAD2Q56VL3 154 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 UQCC3Q6UW78 93 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PARS2Q7L3T8 475 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RNF144BQ7Z419 303 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CPEB2Q7Z5Q1 589 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 VRK3Q8IV63 474 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CMTM8Q8IZV2 173 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 GABRG1Q8N1C3 465 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PRSS33Q8NF86 280 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 OR1L6Q8NGR2 347 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PPTC7Q8NI37 304 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 COQ8AQ8NI60 647 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM239Q8WW34 195 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 HPSE2Q8WWQ2 592 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FYTTD1Q96QD9 318 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 LPAR4Q99677 370 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FICDQ9BVA6 458 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 WWTR1Q9GZV5 400 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF385DQ9H6B1 395 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 SMPD4Q9NXE4 827 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RASL12Q9NYN1 266 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PDE10AQ9Y233 779 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 DUSP10Q9Y6W6 482 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TRIP12Q14669 1992 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A087WV48 116 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A0U1RRA0 63 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FEZF1A0PJY2 475 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 GXYLT2A0PJZ3 443 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 F6UZH7 168 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 K7ERU9 68 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RS1O15537 224 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PLRG1O43660 514 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PCDH7O60245 1069 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 GLSO94925 669 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 EGFP01133 1207 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FGF2P09038 288 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CSF3P09919 207 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TSPAN19P0C672 248 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM225BP0DP42 221 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 IL1RNP18510 177 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 IGFBP6P24592 240 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 OR3A1P47881 315 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CDH12P55289 794 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CCL23P55773 120 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RPS20P60866 119 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CKS1BP61024 79 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 SNRPD2P62316 118 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 HSD11B2P80365 405 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 ID2Q02363 134 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CAV1Q03135 178 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 GPR50Q13585 617 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TAF13Q15543 124 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 NRF1Q16656 503 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 VMACQ2NL98 169 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 ACSM3Q53FZ2 586 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 C6orf52Q5T4I8 152 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 OGFRL1Q5TC84 451 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 KDM4DQ6B0I6 523 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 DNM1P34Q6PK57 102 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 SMARCD3Q6STE5 483 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM205Q6UW68 189 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 SIGLEC15Q6ZMC9 328 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 DPY19L4Q7Z388 723 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 ADIPOR2Q86V24 386 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM126BQ8IUX1 230 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TP53INP2Q8IXH6 220 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CDRT4Q8N9R6 151 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 OR2AP1Q8NGE2 309 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 OR51S1Q8NGJ8 323 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RHOXF1Q8NHV9 184 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RGP1Q92546 391 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CNOT9Q92600 299 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FCGR1BQ92637 280 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RPL3LQ92901 407 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 SNRNP40Q96DI7 357 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 WDYHV1Q96HA8 205 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 KIRREL1Q96J84 757 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TRIM51Q9BSJ1 452 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CCDC32Q9BV29 185 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 ST6GALNAC5Q9BVH7 336 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 VN1R3Q9BXE9 311 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FTHL17Q9BXU8 183 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RNF122Q9H9V4 155 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 UBTD1Q9HAC8 227 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TAS2R13Q9NYV9 303 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM30AQ9NZY2 134 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 HCN3Q9P1Z3 774 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RNF14Q9UBS8 474 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FBXO5Q9UKT4 447 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 ICAM5Q9UMF0 924 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RALGAPA2Q2PPJ7 1873 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 IGKV6D-21A0A0A0MT36 114 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A1W2PPM1 405 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM72A0PK05 275 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MBD3L5A6NJ08 208 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ZAR1LA6NP61 321 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 NPIPB5A8MRT5 1133 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms