RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 FAM3DQ96BQ1 224 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 EIF3KQ9UBQ5 218 aaKnown RBP14.37□□□□□ -0.11
SHQ1-202ENST00000444040 GTF2A1LQ9UNN4 478 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 TOXO94900 526 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 MPC2O95563 127 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 CRABP1P29762 137 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF81P51508 661 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 RIDAP52758 137 aaKnown RBP14.37□□□□□ -0.11
SHQ1-202ENST00000444040 GLO1Q04760 184 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 TMEM225Q6GV28 225 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 MISPQ8IVT2 679 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 OR6S1Q8NH40 331 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 OR52N5Q8NH56 324 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 SLC25A28Q96A46 364 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 CA10Q9NS85 328 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 C2orf72A6NCS6 295 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 LEUTXA8MZ59 168 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 CD37P11049 281 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 PTGS2P35354 604 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 RAB11BQ15907 218 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 RHBDD2Q6NTF9 364 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 BPHLQ86WA6 291 aaPredicted RBP14.37□□□□□ -0.11
SHQ1-202ENST00000444040 WDFY1Q8IWB7 410 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF454Q8N9F8 522 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 NFAM1Q8NET5 270 aaPredicted RBP14.37□□□□□ -0.11
SHQ1-202ENST00000444040 OR4C16Q8NGL9 310 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 OR1J4Q8NGS1 313 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 TMEM234Q8WY98 164 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 ARL5BQ96KC2 179 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 DIABLOQ9NR28 239 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 DHDHQ9UQ10 334 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 MRPS17Q9Y2R5 130 aaKnown RBP14.37□□□□□ -0.11
SHQ1-202ENST00000444040 LOC100289279A0A1B0GTE1 492 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 SNRPGP15A8MWD9 76 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 PYCARD-AS1I3L0S3 204 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 SOX1O00570 391 aaPredicted RBP14.36□□□□□ -0.11
SHQ1-202ENST00000444040 IGFBP3P17936 291 aaPredicted RBP14.36□□□□□ -0.11
SHQ1-202ENST00000444040 P2RX3P56373 397 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 FBXW4P57775 412 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 GUCA2AQ02747 115 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 PUDPQ08623 228 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 ZP4Q12836 540 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 FAM109AQ8N4B1 249 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 PLPP7Q8NBV4 271 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 NKX3-1Q99801 234 aaPredicted RBP14.36□□□□□ -0.11
SHQ1-202ENST00000444040 SLC17A5Q9NRA2 495 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 MGAT4CQ9UBM8 478 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 SUSD2Q9UGT4 822 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 IGLV3-12A0A075B6K2 115 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 ANKUB1A6NFN9 424 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 BCAT2O15382 392 aaPredicted RBP14.36□□□□□ -0.11
SHQ1-202ENST00000444040 AFF3P51826 1226 aaKnown RBP14.36□□□□□ -0.11
SHQ1-202ENST00000444040 TMPRSS9Q7Z410 1059 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 SLC38A9Q8NBW4 561 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 SLC26A10Q8NG04 563 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 OR4D10Q8NGI6 311 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 ST8SIA1Q92185 356 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 TAS2R8Q9NYW2 309 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF69Q9UC07 566 aa14.36□□□□□ -0.11
SHQ1-202ENST00000444040 ADAMTS20P59510 1910 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 UNC13CQ8NB66 2214 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 TRAV18A0A075B6X5 111 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 TMEM272A0A1B0GTI8 110 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 A0A1W2PPC1 479 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 LINC00862A6NCI5 91 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 CREBL2O60519 120 aaPredicted RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 CSF1P09603 554 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 ANKRD37Q7Z713 158 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 ASB10Q8WXI3 467 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 DPCDQ9BVM2 203 aaPredicted RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 DUSP15Q9H1R2 295 aaPredicted RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 UBE2ZQ9H832 354 aaPredicted RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 PRMT8Q9NR22 394 aaPredicted RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 TNFRSF10AO00220 468 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 VSIG10L2P0DP72 767 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 FSTP19883 344 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 FAUP35544 74 aaKnown RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 FMODQ06828 376 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 C17orf67Q0P5P2 114 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 RBMS2Q15434 407 aaKnown RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 PCK2Q16822 640 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 ESCO2Q56NI9 601 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 SLC36A1Q7Z2H8 476 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 FTMTQ8N4E7 242 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 MEIOBQ8N635 442 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF248Q8NDW4 579 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 CHIAQ9BZP6 476 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 GPN1Q9HCN4 374 aaPredicted RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 TAS2R4Q9NYW5 299 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 CDV3Q9UKY7 258 aaKnown RBP14.35□□□□□ -0.11
SHQ1-202ENST00000444040 SRPK3Q9UPE1 567 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 AUP1Q9Y679 476 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 CACNA1CQ13936 2221 aa14.35□□□□□ -0.11
SHQ1-202ENST00000444040 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 OR2A4O95047 310 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 DLX5P56178 289 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 STARD6P59095 220 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 SNTA1Q13424 505 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF574Q6ZN55 896 aaPredicted RBP14.34□□□□□ -0.11
SHQ1-202ENST00000444040 OR8H3Q8N146 312 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms