RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLC26A10Q8NG04 563 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 TMIGD2Q96BF3 282 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 PMCHL2Q9BQD1 86 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 TMEM191AQ9H0A3 160 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 SYNPO2LQ9H987 977 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ELAVL4P26378 380 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 GLDNQ6ZMI3 551 aaPredicted RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 TMEM229BQ8NBD8 167 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR10J5Q8NHC4 309 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 LHX4Q969G2 390 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 TRAV36DV7A0A075B6V5 113 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 MEIKINA0A087WXM9 373 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 IQCF5A8MTL0 148 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ZNF264O43296 627 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 SLC16A7O60669 478 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 RPLP1P05386 114 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 FCGR2AP12318 317 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 NID1P14543 1247 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 RPS18P62269 152 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 AKR1C1Q04828 323 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ALKBH1Q13686 389 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 SLC38A9Q8NBW4 561 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR2AK2Q8NG84 335 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 UBALD1Q8TB05 177 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ZNF583Q96ND8 569 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 NUPL2O15504 423 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 SOD2P04179 222 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 OMGP23515 440 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 IDUAP35475 653 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 HTRA3P83110 453 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ZNF90Q03938 601 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 MRPL52Q86TS9 123 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR10C1Q96KK4 312 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 FBXL12Q9NXK8 326 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ANKUB1A6NFN9 424 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 TMEM210A6NLX4 147 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ZNF891A8MT65 544 aaPredicted RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 HTR5AP47898 357 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 SFRP5Q5T4F7 317 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 NAXEQ8NCW5 288 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 A0A0G2JLL6 359 aaPredicted RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 CHRM4P08173 479 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR8U8P0C7N1 319 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 RPL29P47914 159 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 CD300LDQ6UXZ3 194 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 PRRT2Q7Z6L0 340 aaPredicted RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR6K2Q8NGY2 324 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 DDX31Q9H8H2 851 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 Q9N2K0 584 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 POU2F3Q9UKI9 436 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ATAD5Q96QE3 1844 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 A0A087X0M5 115 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 A0A1B0GX30 115 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CDRT15L2A8MXV6 281 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CCL22O00626 93 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 RNGTTO60942 597 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 TMEM107Q6UX40 140 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 PELI3Q8N2H9 469 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ZNF516Q92618 1163 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 KLHDC7BQ96G42 594 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 SLC35A4Q96G79 324 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 TCTN2Q96GX1 697 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 SLC27A5Q9Y2P5 690 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 KIAA1324LA8MWY0 1029 aaPredicted RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 SUSD5O60279 629 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 PPP1R11O60927 126 aaPredicted RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 OR1D4P47884 311 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 PRLHRP49683 370 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ZNF534Q76KX8 674 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CDC20BQ86Y33 519 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 PDXPQ96GD0 296 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 FKRPQ9H9S5 495 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 UCK1Q9HA47 277 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 HRASLS2Q9NWW9 162 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ZNF230Q9UIE0 474 aaPredicted RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 HSPB8Q9UJY1 196 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 SPTAN1Q13813 2472 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 TRAV20A0A0B4J274 112 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 A0A0J9YY10 115 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 RRP8O43159 456 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 ZNF217O75362 1048 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ST6GAL1P15907 406 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 YPEL5P62699 121 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CSNK1G2P78368 415 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 OR9Q2Q8NGE9 314 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 HES2Q9Y543 173 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ZNF541Q9H0D2 1346 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CNOT1A5YKK6 2376 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 SAP18O00422 153 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 CFHP08603 1231 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 SMIM18P0DKX4 95 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 KHDC3LQ587J8 217 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 RBMXL3Q8N7X1 1067 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 WDR20Q8TBZ3 569 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CDCA3Q99618 268 aaPredicted RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 SMOQ99835 787 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CMC2Q9NRP2 79 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 FAM206AQ9NX38 181 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ZNF28P17035 718 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 C21orf58P58505 322 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms